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Structure paper

TitleStructure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.
Journal, issue, pagesNature, Vol. 568, Page 571-575, Year 2019
Publish dateOct 17, 2018 (structure data deposition date)
AuthorsVerschueren, K.H.G. / Blanchet, C. / Felix, J. / Dansercoer, A. / De Vos, D. / Bloch, Y. / Van Beeumen, J. / Svergun, D. / Gutsche, I. / Savvides, S.N. / Verstraete, K.
External linksNature / PubMed:30944476
MethodsX-ray diffraction
Resolution1.3 - 3.3 Å
Structure data

PDB-6hxh:
Structure of the human ATP citrate lyase holoenzyme in complex with citrate, coenzyme A and Mg.ADP
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

PDB-6hxi:
Structure of ATP citrate lyase from Methanothrix soehngenii in complex with citrate and coenzyme A
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6hxj:
Structure of ATP citrate lyase from Chlorobium limicola in complex with citrate and coenzyme A.
Method: X-RAY DIFFRACTION / Resolution: 2.58 Å

PDB-6hxk:
Structure of the citryl-CoA lyase core module of human ATP citrate lyase in complex with citrate
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-6hxl:
Structure of the citryl-CoA lyase core module of human ATP citrate lyase in complex with citrate and CoASH (space group P21)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-6hxm:
Structure of the citryl-CoA lyase core module of human ATP citrate lyase in complex with citrate and CoASH in space group C2221
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-6hxn:
Structure of the citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase (space group P3121)
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-6hxo:
Structure of the citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase (space group P21)
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6hxp:
Structure of citryl-CoA lyase from Hydrogenobacter thermophilus
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-6hxq:
Structure of citryl-CoA synthetase from Hydrogenobacter thermophilus
Method: X-RAY DIFFRACTION / Resolution: 2.91 Å

PDB-6qcl:
Citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase in complex with acetyl-CoA and L-malate
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-6qfb:
Structure of the human ATP citrate lyase holoenzyme in complex with citrate, coenzyme A and Mg.ADP
Method: X-RAY DIFFRACTION / Resolution: 3.25 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-FLC:
CITRATE ANION

ChemComp-COA:
COENZYME A

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-HOH:
WATER

ChemComp-NA:
Unknown entry

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-ACT:
ACETATE ION

ChemComp-SIN:
SUCCINIC ACID

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-SO4:
SULFATE ION

ChemComp-CAO:
OXIDIZED COENZYME A

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-CA:
Unknown entry

ChemComp-LMR:
(2S)-2-hydroxybutanedioic acid

ChemComp-ACO:
ACETYL COENZYME *A

ChemComp-2HP:
DIHYDROGENPHOSPHATE ION

Source
  • homo sapiens (human)
  • methanosaeta concilii (archaea)
  • chlorobium limicola (bacteria)
  • hydrogenobacter thermophilus (bacteria)
KeywordsLYASE / ATP citrate lyase / central metabolism / acetyl-Coa / citrate shuttle / rTCA cycle / citryl-CoA / lipogenesis / Citryl-CoA synthesise

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