[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

-
Search query

Keywords
Structure methods
Author
Journal
IF

-
List of structure papers

Showing 1 - 20 of 117,228 items (all data)

-
Structure of the microtubule-anchoring factor NEDD1 bound to the γ-tubulin ring complex.

-
Tension-induced suppression of allosteric conformational changes coordinates kinesin-1 stepping.

-
Crystal Structure of SH3-like_bac-type domain (79-145) of Conserved domain protein GBAA_2967 from Bacillus anthracis Ames ancestor.

-
1,2-propanediol dehydratase with no ligand additives

To Be Published,
Kalnins, G. / Estere, M.
Methods: X-ray diffraction

-
1,2-propanediol dehydratase with 0.1 % 1,2-propanediol additive

To Be Published,
Kalnins, G. / Estere, M.
Methods: X-ray diffraction

-
1,2-propanediol dehydratase with 0.1 % glycerol additive

To Be Published,
Kalnins, G. / Estere, M.
Methods: X-ray diffraction

-
1,2-propanediol dehydratase with 0.1 % 1,3-propanediol additive

To Be Published,
Kalnins, G. / Estere, M.
Methods: X-ray diffraction

-
Crystal structure of Isoform Chitin Binding Protein from Iberis umbellata L. (IuCBP III)

-
Crystal strcture of calcium indicator WHaloCaMP1a labeled with BD566-HTL substrate

To Be Published,
Zhang, K.
Methods: X-ray diffraction

-
Structure and infection dynamics of mycobacteriophage Bxb1.

-
"Mix-it-up": Accessible time-resolved cryo-EM on the millisecond timescale

-
Context-Dependent Variability Of HIF Heterodimers Influences Interactions With Macromolecular And Small Molecule Partners

-
Crystal structure of human UBR1 UBR box

To Be Published,
Lee, S.H. / Song, H.K.
Methods: X-ray diffraction

-
BRAF oncogenic mutants evade autoinhibition through a common mechanism.

-
Protein-primed homopolymer synthesis by an antiviral reverse transcriptase.

-
Structure of a new capsid form and comparison with A-, B- and C-capsids clarify herpesvirus assembly

-
Structural basis for plasticity in receptor engagement by an encephalitic alphavirus.

-
Molecular basis of influenza ribonucleoprotein complex assembly and processive RNA synthesis.

-
Structural basis for L-isoaspartyl-containing protein recognition by the PCMTD1 cullin-RING E3 ubiquitin ligase

-
Self-assembly of PprA from D.radiodurans

Pages:

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more