[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 68 items for (author: h. & stark)

PDB-8q7n:
cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region)

PDB-8qo9:
Cryo-EM structure of a human spliceosomal B complex protomer

PDB-8prv:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosreductase domain (FASamn sample)

PDB-8prw:
Cryo-EM structure of the yeast fatty acid synthase at 1.9 angstrom resolution

PDB-8ps1:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASamn sample)

PDB-8ps2:
Asymmetric unit of the yeast fatty acid synthase with ACP at the enoyl reductase domain (FASam sample)

PDB-8ps8:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the enoyl reductase domain (FASam sample)

PDB-8ps9:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASam sample)

PDB-8psa:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASam sample)

PDB-8psf:
Asymmetric unit of the yeast fatty acid synthase in non-rotated state with ACP at the acetyl transferase domain (FASx sample)

PDB-8psg:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the acetyl transferase domain (FASx sample)

PDB-8psj:
Asymmetric unit of the yeast fatty acid synthase in the semi rotated state with ACP at the acetyl transferase domain (FASx sample)

PDB-8psk:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASx sample)

PDB-8psl:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASx sample)

PDB-8psm:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the malonyl/palmitoyl transferase domain (FASx sample)

PDB-8psp:
Asymmetric unit of the yeast fatty acid synthase in rotated state with ACP at the acetyl transferase domain (FASx sample)

PDB-7qp6:
Structure of the human 48S initiation complex in open state (h48S AUG open)

PDB-7qp7:
Structure of the human 48S initiation complex in closed state (h48S AUG closed)

PDB-7oqb:
The U2 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1)

PDB-7oqc:
The U1 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1)

PDB-7oqe:
Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1)

PDB-7abi:
Human pre-Bact-2 spliceosome

PDB-7abg:
Human pre-Bact-1 spliceosome

PDB-7aav:
Human pre-Bact-2 spliceosome core structure

PDB-7abf:
Human pre-Bact-1 spliceosome core structure

PDB-7abh:
Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion)

PDB-7a6a:
1.15 A structure of human apoferritin obtained from Titan Mono- BCOR microscope

PDB-7a6b:
1.33 A structure of human apoferritin obtained from Titan Mono- BCOR microscope

PDB-6y50:
5'domain of human 17S U2 snRNP

PDB-6z6u:
1.25 A structure of human apoferritin obtained from Titan Mono-BCOR microscope

PDB-6z9e:
1.55 A structure of human apoferritin obtained from data subset of Titan Mono-BCOR microscope

PDB-6z9f:
1.56 A structure of human apoferritin obtained from data subset of Titan Mono-BCOR microscope

PDB-6y53:
human 17S U2 snRNP low resolution part

PDB-6y5q:
human 17S U2 snRNP

PDB-6ql5:
Structure of fatty acid synthase complex with bound gamma subunit from Saccharomyces cerevisiae at 2.8 angstrom

PDB-6ql6:
Structure of Fatty acid synthase complex from Saccharomyces cerevisiae at 2.9 Angstrom

PDB-6h55:
core of the human pyruvate dehydrogenase (E2)

PDB-6h60:
pseudo-atomic structural model of the E3BP component of the human pyruvate dehydrogenase multienzyme complex

PDB-6ff7:
human Bact spliceosome core structure

PDB-6ff4:
human Bact spliceosome core structure

PDB-5m32:
Human 26S proteasome in complex with Oprozomib

PDB-5lza:
Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

PDB-5lzb:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

PDB-5lzc:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

PDB-5lzd:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

PDB-5lze:
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

PDB-5lzf:
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

PDB-5l9t:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density

PDB-5l9u:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination

PDB-5khu:
Model of human Anaphase-promoting complex/Cyclosome (APC15 deletion mutant), in complex with the Mitotic checkpoint complex (APC/C-CDC20-MCC) based on cryo EM data at 4.8 Angstrom resolution

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more