[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 64 items for (database: PDB) & (Data entries: Updated only)

PDB-9o8m:
Ab1983 in complex with HIV-1 Env variant WIN332
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

PDB-9d72:
CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

PDB-9d73:
CryoEM structure of anti-MHC-I mAb B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Lei H, Huang R, Margulies DH

PDB-9oa9:
CryoEM structure of anti-MHC-I mAb B1.23.2 Fc domains
Method: single particle / : Jiang J, Natarajan K, Margulies DH

PDB-9nen:
Cryo-EM structure of human Ro60
Method: single particle / : Nam H, Deme JC, Lea SM, Wolin SL

PDB-9nep:
Cryo-EM structure of Ro60/minimal misfolded pre-5S rRNA complex
Method: single particle / : Nam H, Deme JC, Lea SM, Wolin SL

PDB-9nf8:
Cryo-EM structure of Ro60/La/truncated misfolded human pre-5S rRNA complex with Fab, composite map
Method: single particle / : Nam H, Deme JC, Lea SM, Wolin SL

PDB-9nfa:
Cryo-EM structure of Ro60/La/minimal misfolded pre-5S rRNA complex with Fab, composite map
Method: single particle / : Nam H, Deme JC, Lea SM, Wolin SL

PDB-10ad:
Cryo-EM structure of the human BK channel bound to the agonist NS1619
Method: single particle / : Gonzalez-Sanabria N, Contreras GF, Perozo E, Latorre R

PDB-9yc6:
Mutant human uPAR bound to the Fab fragment of the targeted cancer therapeutic antibody FL1
Method: single particle / : Anane RF, Whisstock JC, Engelholm LH, Law RHP, Ploug M

PDB-9pdp:
In situ cryoEM structure of bacteriophage P22 portal barrel
Method: single particle / : Yu H, Molineux IJ, Liu J

PDB-9pgg:
Cryo-EM structure of bacteriophage P22 gp1-gp5-gp4 complex at 2.76 angstrom
Method: single particle / : Yu H, Liu J, Molienux IJ

PDB-9y66:
attLsym bound serine integrase complex in the dimeric state
Method: single particle / : Shin H, Pigli Y, Pena Reyes T, Fuller JR, Olorunniji FJ, Rice PA

PDB-9qjc:
Yeast pre-60S Domain II intermediate
Method: single particle / : Grundmann L, Gerhalter M, Prattes M, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

PDB-9oab:
C3 reconstruction of the thermophilic bacteriophage P74-26 Neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9oac:
C5 reconstruction of the thermophilic bacteriophage P74-26 Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9oad:
C1 reconstruction of the thermophilic bacteriophage P74-26 Portal and Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9oae:
Composite reconstruction of the thermophilic bacteriophage P74-26 Neck and Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9q7a:
dsDNA in the central channel of the bacteriophage P74-26 neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9t3x:
cryo-EM structure of CPSF160-WDR33-ZC3H18
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

PDB-9zdw:
Pseudomonas phage DEV delta-gp53 mutant neck and tail (portal, head-to-tail and tail tube proteins)
Method: single particle / : Bellis NF, Cingolani G

PDB-9ze4:
Asymmetric Tail Gating Complex of Pseudomonas Phage DEV
Method: single particle / : Bellis NF, Cingolani G

PDB-9qik:
M2 nucleosome
Method: single particle / : Kunert F, Lammens K, Hopfner KP

PDB-9mt7:
Cryo-EM Structure of the Magnesium Transporter MgtA in the E2 Conformation Bound to Mg2+
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9oal:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

PDB-9rcv:
Structure of the Human Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

PDB-9nrx:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nry:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nrz:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9y5q:
Cryo EM structure of KCa3.1_R355K_I/calmodulin channel in complex with rimtuzalcap
Method: single particle / : Nam YW, Zhang M

PDB-9mpp:
The cryo-EM structure of nucleosome-bound DNA methyltransferases DNMT3A2 and DNMT3L
Method: single particle / : Yan Y, Zhou XE, Xu TH

PDB-9ydz:
Cryo EM structure of KCa3.1_R355K_II/calmodulin channel in complex with rimtuzalcap
Method: single particle / : Nam YW, Zhang M

PDB-9pdx:
Human antibody Fab MPV513 bound to hMPV DsCav-ES2
Method: single particle / : Ghazi Esfahani B, Mousa J, Khalil AM

PDB-8qvp:
Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 1
Method: helical / : Ooi SA, Valli D, Maj M

PDB-9e0z:
Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Nde1-Lis1 condition
Method: single particle / : Yang J, Zhang K

PDB-9e10:
Dimeric motor domains from phi dynein-1 under Lis1 condition
Method: single particle / : Yang J, Zhang K

PDB-9e11:
Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Lis1 condition
Method: single particle / : Yang J, Zhang K

PDB-9e12:
Full-length human dynein-1 in phi comformation under Lis1 condition
Method: single particle / : Yang J, Zhang K

PDB-9e13:
Full-length human dynein-1 in phi-like comformation bound to a Lis1 dimer under Lis1 condition
Method: single particle / : Yang J, Zhang K

PDB-9e14:
Full-length human dynein-1 in phi-like comformation bound to a Lis1 dimer under Nde1-Lis1 condition
Method: single particle / : Yang J, Zhang K

PDB-9e21:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

PDB-9s37:
Structure of LGR4 with NB21
Method: single particle / : Wang L, Geng Y

PDB-8rm8:
Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S28P, polymorph 1
Method: helical / : Ooi SA, Valli D, Maj M

PDB-8rm9:
Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S28P, polymorph 2
Method: helical / : Ooi SA, Valli D, Maj M

PDB-9dn2:
TJ5-1 Fab in complex with NG2 COBRA hemagglutinin
Method: single particle / : Nagashima K, Mousa J

PDB-9do2:
#1664 Fab in complex with NG2 COBRA hemagglutinin
Method: single particle / : Nagashima K, Mousa J

PDB-9o9s:
Structure of human MPC matrix-open
Method: single particle / : Qi X, Sun Y, Wang Y

PDB-9o9t:
Structure of human MPC IMS-open
Method: single particle / : Qi X, Sun Y, Wang Y

PDB-9p8t:
Structure of CloA co-expressed with CloB
Method: single particle / : Yamaguchi S, Fernandez SG, Wassarman DR, Luder M, Schwede F, Kranzusch PJ

PDB-9ore:
CryoEM structure of 4F11 Fab bound to stabilized MPV-2c HMPV preF
Method: single particle / : McGovern MR, Pancera M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more