[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 19 items for Latest entries: updated PDB

PDB-5m50:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AP, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5m54:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AJ, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-5m5c:
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Method: single particle / : Akhmanova A, Moores CA, Baldus M, Steinmetz MO, Topf M, Roberts AJ, Grant BJ, Scarabelli G, Joseph AP, van Hooff JJE, Houben K, Hua S, Luo Y, Stangier MM, Jiang K, Atherton J

PDB-6b3o:
Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion
Method: single particle / : Walls AC, Tortorici MA, Snijder J, Xiong X, Bosch BJ, Rey FA, Veesler D

PDB-5wlc:
The complete structure of the small subunit processome
Method: single particle / : Barandun J, Chaker-Margot M, Hunziker M, Klinge S

PDB-6b1t:
Improved cryoEM structure of human adenovirus type 5 with atomic details of minor proteins VI and VII
Method: single particle / : Dai XH, Wu L, Sun R, Zhou ZH

PDB-5oik:
Structure of an RNA polymerase II-DSIF transcription elongation complex
Method: single particle / : Bernecky C, Plitzko JM, Cramer P

PDB-5ool:
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Method: single particle / : Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V

PDB-5oom:
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Method: single particle / : Brown A, Rathore S, Kimanius D, Aibara S, Bia XC, Rorbach J, Amunts A, Ramakrishnan V

PDB-5oqv:
Near-atomic resolution fibril structure of complete amyloid-beta(1-42) by cryo-EM
Method: helical / : Gremer L, Schoelzel D, Schenk C, Reinartz E, Labahn J, Ravelli R, Tusche M, Lopez-Iglesias C, Hoyer W, Heise H, Willbold D, Schroeder GF

PDB-5xxb:
Large subunit of Toxoplasma gondii ribosome
Method: single particle / : Li Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5xxu:
Small subunit of Toxoplasma gondii ribosome
Method: single particle / : LI Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5xy3:
Large subunit of Trichomonas vaginalis ribosome
Method: single particle / : Li Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5xyi:
Small subunit of Trichomonas vaginalis ribosome
Method: single particle / : Li Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5h3o:
Structure of a eukaryotic cyclic nucleotide-gated channel
Method: single particle / : Li M, Zhou X, Wang S, Michailidis I, Gong Y, Su D, Li H, Li X, Yang J

PDB-5h1b:
Human RAD51 presynaptic complex
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

PDB-5h1c:
Human RAD51 post-synaptic complexes
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

PDB-5gka:
cryo-EM structure of human Aichi virus
Method: single particle / : Zhu L, Wang XX, Ren JS, Tuthill TJ, Fry EE, Rao ZH, Stuart DI

PDB-5jb1:
Pseudo-atomic structure of Human Papillomavirus Type 59 L1 Virus-like Particle
Method: single particle / : Li ZH, Yan XD, Yu H, Zheng QB, Gu Y, Li SW

+
About EMN search

-
News

-
Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

+
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more