[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 74 items for (author: de & jong & l)

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.

EMDB-38216:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2

PDB-8xbf:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement

EMDB-16144:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1

PDB-8bon:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1

EMDB-29714:
Cryo-EM structure of DDB1deltaB-DDA1-DCAF16-BRD4(BD2)-MMH2

PDB-8g46:
Cryo-EM structure of DDB1deltaB-DDA1-DCAF16-BRD4(BD2)-MMH2

EMDB-26547:
Mediator-PIC Early (Tail A + Upstream DNA & Activator)

EMDB-26551:
Mediator-PIC Early (Composite Model)

PDB-7uik:
Mediator-PIC Early (Tail A + Upstream DNA & Activator)

PDB-7uio:
Mediator-PIC Early (Composite Model)

EMDB-26542:
Core Mediator-PICearly (Copy A)

EMDB-26543:
Mediator-PIC Early (Tail A)

EMDB-26544:
Mediator-PIC Early (Core B)

EMDB-26545:
Mediator-PIC Early (Mediator A)

EMDB-26548:
Mediator-PIC Early (Tail A/B Dimer)

EMDB-28023:
Dimerized Mediator-PIC with early GTFs and TFIIE on a divergent promoter

EMDB-28024:
Dimerized Mediator PIC with early GTFs on a divergent promoter

PDB-7ui9:
Core Mediator-PICearly (Copy A)

PDB-7uic:
Mediator-PIC Early (Tail A)

PDB-7uif:
Mediator-PIC Early (Core B)

PDB-7uig:
Mediator-PIC Early (Mediator A)

PDB-7uil:
Mediator-PIC Early (Tail A/B Dimer)

EMDB-28551:
RMC-5552 in complex with mTORC1 and FKBP12

PDB-8era:
RMC-5552 in complex with mTORC1 and FKBP12

EMDB-26217:
Negative stain EM map of COVA1-07 mAb bound to the S2 domain of SARS-CoV-2 S

EMDB-26218:
Negative stain EM map of COVA2-14 mAb bound to the S2 domain of SARS-CoV-2 S

EMDB-26219:
Negative stain EM map of COVA2-18 mAb bound to the S2 domain of SARS-CoV-2 S

EMDB-26220:
Negative stain EM map of the S2 domain of SARS-CoV-2 S

EMDB-13139:
Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with fragment 166 at the transient P-pocket

EMDB-13156:
Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with fragment F04 at the transient P-pocket

PDB-7ozw:
Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with fragment 166 at the transient P-pocket

PDB-7p15:
Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with fragment F04 at the transient P-pocket

EMDB-11814:
The cryo-EM structure of the Vag8-C1 inhibitor complex

PDB-7akv:
The cryo-EM structure of the Vag8-C1 inhibitor complex

EMDB-22989:
Structure of kinase and Central lobes of yeast CKM

EMDB-22990:
Structure of the H-lobe of yeast CKM

EMDB-22991:
Structure of the yeast CKM

PDB-7kpv:
Structure of kinase and Central lobes of yeast CKM

PDB-7kpw:
Structure of the H-lobe of yeast CKM

PDB-7kpx:
Structure of the yeast CKM

EMDB-11657:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc

PDB-7a5v:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc

EMDB-11638:
Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more