[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 335 items for (author: zou & b)

EMDB-63995:
The structure of mCAT1 in complex with its substrate ornithine and the RBD of FrMLV.
Method: single particle / : Xia LY, Yang Y, Chen XM

PDB-9uat:
The structure of mCAT1 in complex with its substrate ornithine and the RBD of FrMLV.
Method: single particle / : Xia LY, Yang Y, Chen XM

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-45622:
Fab fragment of Antibody with NiV glycoprotein F
Method: single particle / : Ouizougun-Oubari M, Bajic G

PDB-9cin:
Fab fragment of Antibody with NiV glycoprotein F
Method: single particle / : Ouizougun-Oubari M, Bajic G

EMDB-73821:
HECT domain of NEDD4-2 complex with a targeted nanobody, nb.C11
Method: single particle / : Afriyie E, Clarke OB

PDB-9z5q:
HECT domain of NEDD4-2 complex with a targeted nanobody, nb.C11
Method: single particle / : Afriyie E, Clarke OB

EMDB-47692:
Off-pathway Mycobacterium tuberculosis transcription initiation promoter complex (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47695:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 7-mer RNA and disordered Beta' Lid element (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47706:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and disordered Sigma-A region 4 domain (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47707:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and closed Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47708:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 5-mer RNA and open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47709:
De Novo Mycobacterium tuberculosis transcription initiation pre-RPO promoter complex with open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47710:
De novo backtracked transcription elongation complex of Mycobacterium tuberculosis RNA polymerase on a linear DNA fragment (TEC-Backtracked)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e7v:
Off-pathway Mycobacterium tuberculosis transcription initiation promoter complex (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e7y:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 7-mer RNA and disordered Beta' Lid element (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e84:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and disordered Sigma-A region 4 domain (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e85:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and closed Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e86:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 5-mer RNA and open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e87:
De Novo Mycobacterium tuberculosis transcription initiation pre-RPO promoter complex with open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e88:
De novo backtracked transcription elongation complex of Mycobacterium tuberculosis RNA polymerase on a linear DNA fragment (TEC-Backtracked)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-72209:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-72215:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449; G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-52226:
Structure of Zincore (SEPHS1:QRICH1) binding to ZFP91 on DNA
Method: single particle / : Borza R, Perrakis A

EMDB-52227:
Structure of 2x Zincore (SEPHS1:QRICH1) binding to ZFP91 on DNA
Method: single particle / : Borza R, Perrakis A

PDB-9hjt:
Structure of Zincore (SEPHS1:QRICH1) binding to ZFP91 on DNA
Method: single particle / : Borza R, Perrakis A

PDB-9hju:
Structure of 2x Zincore (SEPHS1:QRICH1) binding to ZFP91 on DNA
Method: single particle / : Borza R, Perrakis A

EMDB-54139:
Structure of Avast type 5 activator (Gp316, JADA jumbophage protein)
Method: single particle / : Pacesa M, Muralidharan A, Brouns SJJ

PDB-9rp3:
Structure of Avast type 5 activator (Gp316, JADA jumbophage protein)
Method: single particle / : Pacesa M, Muralidharan A, Brouns SJJ

EMDB-50201:
Human condensin II - M18BP1 complex
Method: single particle / : Borsellini A, Vannini A

PDB-9f5w:
Human condensin II - M18BP1 complex
Method: single particle / : Borsellini A, Vannini A

EMDB-60922:
Cryo-EM structure of a truncated Nipah Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Chang T, Gui J, Li Z, Zhao H, Zou B, Li M, He J, Chen X, Xiong X

EMDB-60923:
Cryo-EM structure of the full-length Nipah Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Chang T, Gui J, Li Z, Zhao H, Zou B, Li M, He J, Chen X, Xiong X

PDB-9iv9:
Cryo-EM structure of a truncated Nipah Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Chang T, Gui J, Li Z, Zhao H, Zou B, Li M, He J, Chen X, Xiong X

PDB-9iva:
Cryo-EM structure of the full-length Nipah Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Chang T, Gui J, Li Z, Zhao H, Zou B, Li M, He J, Chen X, Xiong X

EMDB-50532:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 3
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-50534:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 1
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-50535:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 2
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

PDB-9fl7:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 3
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-60850:
Enterococcus faecalis ROOL RNA monomer
Method: single particle / : Wang L, Xie JH, Su ZM

EMDB-61123:
Enterococcus faecalis ncRNA tetramer
Method: single particle / : Wang L, Xie JH, Shang ST, Su ZM

EMDB-61125:
Enterococcus faecalis ncRNA octamer
Method: single particle / : Wang L, Xie JH, Shang ST, Su ZM

EMDB-61189:
lactobacillus salivarius ncRNA hexamer
Method: single particle / : Wang L, Xie JH, Shang ST, Su ZM

EMDB-62487:
Fusobacterium ncRNA dimer
Method: single particle / : Tu YF, Shang ST, Su ZM

EMDB-62489:
Fusobacterium ncRNA dimer2
Method: single particle / : Tu YF, Shang ST, Su ZM

EMDB-62721:
Streptococcus agalactiae ncRNA decocamer
Method: single particle / : Peng X, Wang L, Su Z

EMDB-62724:
Streptococcus agalactiae GOLLD RNA 3' domain dodecamer
Method: single particle / : Peng X, Wang L, Su Z

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more