[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 453 items for (author: zimmer & j)

EMDB-53358:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-53359:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-53360:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-53361:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qtp:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qtq:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qtr:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qts:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-73321:
Chlorella virus hyaluronan synthase bound to DDM
Method: single particle / : Stephens Z, Zimmer J

EMDB-73323:
Chlorella virus hyaluronan synthase bound to a proofreading UDP-GlcA
Method: single particle / : Stephens Z, Zimmer J

EMDB-73324:
Chlorella virus hyaluronan synthase bound to an inserted UDP-GlcA
Method: single particle / : Stephens Z, Zimmer J

PDB-9yq2:
Chlorella virus hyaluronan synthase bound to DDM
Method: single particle / : Stephens Z, Zimmer J

PDB-9yq4:
Chlorella virus hyaluronan synthase bound to a proofreading UDP-GlcA
Method: single particle / : Stephens Z, Zimmer J

PDB-9yq5:
Chlorella virus hyaluronan synthase bound to an inserted UDP-GlcA
Method: single particle / : Stephens Z, Zimmer J

EMDB-70812:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

EMDB-70813:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

PDB-9osw:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

PDB-9osy:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

EMDB-52635:
50S subunit of P. gingivalis ribosome with Lefamulin
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-52640:
70S P. gingivalis ribosome erm-delta-porN strain
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-52641:
Porphyromonas gingivalis 70S ribosome (W83 Strain)
Method: single particle / : Hiregange DG, Bashan A, Yonath A

PDB-9i5t:
50S subunit of P. gingivalis ribosome with Lefamulin
Method: single particle / : Hiregange DG, Bashan A, Yonath A

PDB-9i5v:
70S P. gingivalis ribosome erm-delta-porN strain
Method: single particle / : Hiregange DG, Bashan A, Yonath A

PDB-9i5x:
Porphyromonas gingivalis 70S ribosome (W83 Strain)
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-52767:
Focus refined 50S map of 70S P. gingivalis ribosome W83 strain
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-52768:
Focus refined 30S body map of 70S P. gingivalis ribosome W83 strain
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-52770:
Focus refined 30S head map of 70S P. gingivalis ribosome W83 strain
Method: single particle / : Hiregange DG, Bashan A, Yonath A

EMDB-43738:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (consensus map).
Method: single particle / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43739:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43740:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43741:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43758:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament - apo state (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43759:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament -apo state (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w23:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (consensus map).
Method: single particle / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w25:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w27:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w28:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w2t:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament - apo state (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w2u:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament -apo state (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-52642:
Consensus map of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-52647:
Focused refinement of the large ribosomal subunit of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-52648:
Postprocessed map of the focused refinement of the small ribosomal subunit body of a MLSb sensitive S. aureus strain "KES34"
Method: single particle / : Rivalta A, Yonath A

EMDB-52649:
Postprocessed map of the focused refinement of the small ribosomal subunit head of the MLSb sensitive S. aureus strain "KES34"
Method: single particle / : Rivalta A, Yonath A

EMDB-53066:
Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-53067:
Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

PDB-9qeg:
Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

PDB-9qeh:
Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-46004:
Outward-facing OATP1B1 bound to sybody Sb5
Method: single particle / : Sung MW, Lees JA, Han S

EMDB-46005:
Outward-facing Atorvastatin-bound OATP1B1 with sybody Sb5
Method: single particle / : Sung MW, Lees JA, Han S

EMDB-46006:
Outward-facing cyclosporine A-bound OATP1B1 with sybody 5 (Sb5)
Method: single particle / : Sung MW, Lees JA, Han S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more