[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 143 items for (author: zhang & yt)

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-46785:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46786:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46787:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46789:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), tail focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46791:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-64672:
GPR133-Gain-miniG13 complex
Method: single particle / : Xi Y, Pu X, Ping Y

EMDB-60835:
Structure of rat TRPV1 in complex with PSFL426-S5
Method: single particle / : Chen X, Yu Y

EMDB-49523:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-49525:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlv:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlx:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-38183:
Identification, structure and agonist design of an androgen membrane receptor.
Method: single particle / : Ping YQ, Yang Z

EMDB-38184:
Identification, structure and agonist design of an androgen membrane receptor
Method: single particle / : Ping YQ, Yang Z

EMDB-38185:
Identification, structure and agonist design of an androgen membrane receptor
Method: single particle / : Ping YQ, Yang Z

EMDB-60917:
Identification, structure and agonist design of an androgen membrane receptor.
Method: single particle / : Ping YQ, Yang Z

EMDB-60918:
Identification, structure and agonist design of an androgen membrane receptor.
Method: single particle / : Ping YQ, Yang Z

EMDB-50034:
SARS-CoV-2 M protein dimer (short form) in complex with Fab-B and CIM-834
Method: single particle / : Debski-Antoniak OJ, Hurdiss DL

EMDB-50035:
SARS-CoV-2 M protein dimer (long form) in complex with Fab-E and incubated with CIM-834
Method: single particle / : Debski-Antoniak O, Hurdiss DL

PDB-9exa:
SARS-CoV-2 M protein dimer (short form) in complex with Fab-B and CIM-834
Method: single particle / : Debski-Antoniak OJ, Hurdiss DL

EMDB-37965:
E2 core of 2-oxoglutarate dehydrogenase complex
Method: single particle / : Zhang SS, Zhang YT

EMDB-37966:
E1 of 2-oxoglutarate dehydrogenase complex subtomogram averaging map
Method: subtomogram averaging / : Zhang SS, Zhang YT

EMDB-37967:
E2 of 2-oxoglutarate dehydrogenase complex subtomogram averaging map
Method: subtomogram averaging / : Zhang SS, Zhang YT

EMDB-37968:
E3 of 2-oxoglutarate dehydrogenase complex subtomogram averaging map
Method: subtomogram averaging / : Zhang SS, Zhang YT

EMDB-41346:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41359:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41360:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41361:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41362:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tkc:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl2:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl3:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl4:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl5:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41770:
Apo form of human ATE1
Method: single particle / : Huang W, Zhang Y, Taylor DJ

EMDB-42071:
human ATE1 in complex with Arg-tRNA and a peptide substrate
Method: single particle / : Huang W, Zhang Y, Taylor DJ

EMDB-41426:
Cryo-EM structure of TRNM-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

EMDB-41438:
Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Hoyt F, Hansen B, Fischer E, Shapiro LS, Kwong PD

EMDB-41440:
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

EMDB-41459:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Method: single particle / : Zhou T, Morano NC, Roark RS, Kwong PD, Xu J

PDB-8tnu:
Cryo-EM structure of TRNM-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

PDB-8to7:
Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Hoyt F, Hansen B, Fischer E, Shapiro LS, Kwong PD

PDB-8to9:
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

PDB-8top:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Method: single particle / : Zhou T, Morano NC, Roark RS, Kwong PD

EMDB-41309:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Morano NC, Hoyt F, Hansen B, Fischer E, Shapiro L

EMDB-41310:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO GPZ6-a.01 FAB
Method: single particle / : Morano NC, Becker JE, Shapiro L, Ho DD

PDB-8tjr:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-a.01 FAB
Method: single particle / : Morano NC, Hoyt F, Hansen B, Fischer E, Shapiro L

PDB-8tjs:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO GPZ6-a.01 FAB
Method: single particle / : Morano NC, Becker JE, Shapiro L

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more