[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 273 items for (author: zhang & yb)

EMDB-70088:
cryo-EM structure of TolQR conformation1 in SMA nanodiscs
Method: single particle / : Luo YB, Shen CR

EMDB-62019:
The structure of Microviridae PJNS001
Method: single particle / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62020:
The Map of PJNS002 spike protein G with Salmonella enterica LPS
Method: single particle / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62021:
The STA map of PJNS001 attached on Salmonella outer membrane
Method: subtomogram averaging / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62022:
The STA map of PJNS002 attached on Salmonella outer membrane
Method: subtomogram averaging / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62023:
The structure of Salmonella phage PJNS002
Method: single particle / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62143:
SARS-CoV-2 related bat coronavirus BANAL-52 spike in the locked state
Method: single particle / : Li QQ, Cai X, Li XN, Zhang YB, Li R, Kang ZR, Wan DD, Wang JX, Yang JX, Shi JX, Jin SL, Peng Y, Zang N, Xie ZK, Wan YS, Shang J

EMDB-46715:
MERS NTD-specific polyclonal antibodies
Method: single particle / : Ward AB, Bangaru S

EMDB-41346:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41359:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41360:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41361:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41362:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tkc:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl2:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl3:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl4:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl5:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41461:
Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Method: single particle / : Wang S, Kwong PD

PDB-8tox:
Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Method: single particle / : Wang S, Kwong PD

EMDB-41426:
Cryo-EM structure of TRNM-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

EMDB-41438:
Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Hoyt F, Hansen B, Fischer E, Shapiro LS, Kwong PD

EMDB-41440:
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

EMDB-41459:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Method: single particle / : Zhou T, Morano NC, Roark RS, Kwong PD, Xu J

PDB-8tnu:
Cryo-EM structure of TRNM-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

PDB-8to7:
Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Hoyt F, Hansen B, Fischer E, Shapiro LS, Kwong PD

PDB-8to9:
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

PDB-8top:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Method: single particle / : Zhou T, Morano NC, Roark RS, Kwong PD

EMDB-41309:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Morano NC, Hoyt F, Hansen B, Fischer E, Shapiro L

EMDB-41310:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO GPZ6-a.01 FAB
Method: single particle / : Morano NC, Becker JE, Shapiro L, Ho DD

PDB-8tjr:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-a.01 FAB
Method: single particle / : Morano NC, Hoyt F, Hansen B, Fischer E, Shapiro L

PDB-8tjs:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO GPZ6-a.01 FAB
Method: single particle / : Morano NC, Becker JE, Shapiro L

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-44484:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

EMDB-44491:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9ber:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9bew:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

PDB-9bf6:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-18723:
Cryo-EM structure of the cross-exon pre-B complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18724:
Cryo-EM structure of the cross-exon pre-B+5'ss complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18725:
Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex(tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18726:
Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPgammaS complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18727:
Cryo-EM structure of the cross-exon pre-B+AMPPNP complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-19594:
cryo-EM structure of dimerized cross-exon pre-B complex
Method: single particle / : Zhang Z, Kumar V, Stark H, Luehrmann R

EMDB-19595:
cryo-EM structure of dimerized cross-exon B-like complex
Method: single particle / : Zhang Z, Kumar V, Stark H, Luehrmann R

EMDB-19596:
cryo-EM structure of dimerized cross-exon pre-B+5'ss+ATPyS complex
Method: single particle / : Zhang Z, Kumar V, Stark H, Luehrmann R

EMDB-19597:
cryo-EM structure of dimerized cross-exon pre-B+5'ssLNG+ATPyS complex
Method: single particle / : Zhang Z, Kumar V, Stark H, Luehrmann R

EMDB-19598:
cryo-EM structure of dimerized cross-exon pre-B+ATP complex
Method: single particle / : Zhang Z, Kumar V, Stark H, Luehrmann R

EMDB-19847:
cryo-EM structure of pre-B+5'ss complex (incubated at 30 degree)
Method: single particle / : Zhang Z, Kumar V, Stark H, Luehrmann R

EMDB-19848:
cryo-EM structure of cross-exon pre-B+5'ss+ATP complex
Method: single particle / : Zhang Z, Kumar V, Stark H, Luehrmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more