[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: yoshioka & ck)

EMDB-17769:
Subtomogram average of the Campylobacter jejuni motor with basal disk genes, flgPQ, expressed at very low level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17770:
Subtomogram average of the Campylobacter jejuni flagellar motor with the basal disk genes, flgPQ, expressed at low level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17771:
Subtomogram average of the Campylobacter jejuni flagellar motor with the basal disk genes, flgPQ, expressed at medium level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17772:
Subtomogram average of the Campylobacter jejuni motor with the basal disk genes, flgPQ, expressed at high level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17773:
Subtomogram average of the Campylobacter jejuni flgP S69A E157A K159A (flgP-AAA) flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17774:
Subtomogram average of the Campylobacter jejuni flgP Del18-62 flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17775:
Subtomogram average of the Campylobacter jejuni flgPQ deletion flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17776:
Subtomogram average of the Campylobacter jejuni DflgPQ D0661 DkpsD DpglAB flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-18274:
Subtomogram average of the Campylobacter jejuni FlgP-Lpp55 flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-22854:
Adeno-Associated Virus (AAV-DJ) - cryo-EM structure at 1.56 Angstrom Resolution
Method: single particle / : Xie Q, Yoshioka CK

EMDB-22358:
Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstroms
Method: single particle / : Flores JA, Haddad BG

EMDB-22382:
Sheep Connexin-50 at 2.5 angstroms resolution, Lipid Class 1
Method: single particle / : Flores JA, Haddad BG

EMDB-22390:
Sheep Connexin-50 at 2.5 angstroms reoslution, Lipid Class 2
Method: single particle / : Flores JA, Haddad BG

EMDB-22391:
Sheep Connexin-50 at 2.5 angstroms resolution, Lipid Class 3
Method: single particle / : Flores JA, Haddad BG

PDB-7jjp:
Sheep Connexin-50 at 1.9 angstroms resolution by CryoEM
Method: single particle / : Flores JA, Haddad BG, Dolan KD, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

PDB-7jkc:
Sheep Connexin-46 at 1.9 angstroms resolution by CryoEM
Method: single particle / : Flores JA, Haddad BG, Dolan KD, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

PDB-7jlw:
Sheep Connexin-50 at 2.5 angstroms resolution, Lipid Class 1
Method: single particle / : Flores JA, Haddad BG, Dolan KA, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

PDB-7jm9:
Sheep Connexin-50 at 2.5 angstroms reoslution, Lipid Class 2
Method: single particle / : Flores JA, Haddad BG, Dolan KA, Myers JA, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

PDB-7jmc:
Sheep Connexin-50 at 2.5 angstroms resolution, Lipid Class 3
Method: single particle / : Flores JA, Haddad BG, Dolan KD, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

PDB-7jmd:
Sheep Connexin-46 at 2.5 angstroms resolution, Lipid Class 1
Method: single particle / : Flores JA, Haddad BG, Dolan KA, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

PDB-7jn0:
Sheep Connexin-46 at 2.5 angstroms resolution, Lipid Class 2
Method: single particle / : Flores JA, Haddad BG, Dolan KA, Myers JA, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

PDB-7jn1:
Sheep Connexin-46 at 2.5 angstroms resolution, Lipid Class 3
Method: single particle / : Flores JA, Haddad BG, Dolan KD, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL

EMDB-9116:
CryoEM reconstruction of native lens connexin-46/50 at 3.4 angstrom resolution
Method: single particle / : Myers JB, Reichow SL

PDB-6mhq:
Structure of connexin-46 intercellular gap junction channel at 3.4 angstrom resolution by cryoEM
Method: single particle / : Myers JB, Reichow SL

PDB-6mhy:
Structure of connexin-50 intercellular gap junction channel at 3.4 angstrom resolution by cryoEM
Method: single particle / : Myers JB, Reichow SL

EMDB-2453:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4a
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2454:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4b
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2455:
30S Ribosome Subunit Assembly Intermediates, Intermediate 4c
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2456:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4d
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2457:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4e
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2458:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group1b
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2460:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 1a
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2461:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 2a
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2465:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 2b
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2466:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 2c
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2467:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 3a
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2468:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 3b
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2469:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 3c
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-2470:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4f
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

EMDB-1783:
30S Ribosome Subunit Assembly Intermediates
Method: single particle / : Mulder AM, Yoshioka C, Beck A, Bunner A, Milligan RA, Potter CS, Carragher B, Williamson JR

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more