[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 15,446 items for (author: yi & l)

EMDB-66931:
Cryo-EM structure of Hsp90(E47A)-FKBP8 complex
Method: single particle / : Ge M, Li Z, Bai Z, Zhang Y, Zhang Z

PDB-9xj8:
Cryo-EM structure of Hsp90(E47A)-FKBP8 complex
Method: single particle / : Ge M, Li Z, Bai Z, Zhang Y, Zhang Z

EMDB-54707:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

PDB-9saz:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

EMDB-59064:
Cryo-EM structure of Saccharomyces cerevisiae Erv14-Qdr2 complex in detergent
Method: single particle / : Tunyi J, Adams O, Newstead S

EMDB-59065:
Cryo-EM structure of Saccharomyces cerevisiae Erv14-Qdr2 complex in lipid nanodiscs (double Erv14 assembly)
Method: single particle / : Adams O, Parker JL, Newstead S

EMDB-59066:
Cryo-EM structure of Saccharomyces cerevisiae Erv14-Qdr2 complex in lipid nanodiscs (single Erv14 assembly)
Method: single particle / : Adams O, Parker JL, Newstead S

EMDB-66494:
high affinity IgG1 Fc variant in complex with Fc gamma receptor IIIA 158F
Method: single particle / : Longlong L, Yangyihua Z, Jiannan F, Xiang G, Yaowei M

PDB-9x35:
high affinity IgG1 Fc variant in complex with Fc gamma receptor IIIA 158F
Method: single particle / : Longlong L, Yangyihua Z, Jiannan F, Xiang G, Yaowei M

EMDB-75729:
Mouse monoclonal antibody A2 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

EMDB-75811:
Mouse monoclonal antibody A11 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

EMDB-75813:
Human monoclonal antibodies 4C12 and 4H3 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

EMDB-75814:
Human monoclonal antibody 8C5 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

EMDB-75815:
Human Monoclonal Antibody RVC68 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

EMDB-75816:
Monoclonal antibodies A4, 7E8, and RVC68 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

EMDB-75817:
Human monoclonal antibodies 7E8 and 10H5 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

PDB-11iw:
Mouse monoclonal antibody A2 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

PDB-11lp:
Mouse monoclonal antibody A11 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

PDB-11lq:
Human monoclonal antibodies 4C12 and 4H3 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

PDB-11lr:
Human monoclonal antibody 8C5 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

PDB-11ls:
Human Monoclonal Antibody RVC68 in complex with rabies virus glycoprotein
Method: single particle / : Callaway HM, Zyla D, Hastie K, Harkins S, Kothalawalage S, Samarasinghe S, Flynn A, Hariharan C, Yin J, Corti D, Bouhry H, Dessain S, Saphire EO

EMDB-63757:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

EMDB-65041:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

PDB-9mao:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

PDB-9vfx:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

EMDB-76384:
Cryo-EM structure of BCMA in complex with the BCMA-targeted Fab arm of teclistamab and the Fab fragment of an anti-lambda light chain antibody REGN15499
Method: single particle / : Zhou Y, Franklin MC

EMDB-76385:
Cryo-EM structure of BCMA in complex with the BCMA-targeted Fab arm of linvoseltamab and the Fab fragment of an anti-kappa light chain antibody REGN654
Method: single particle / : Zhou Y, Franklin MC

PDB-12er:
Cryo-EM structure of BCMA in complex with the BCMA-targeted Fab arm of teclistamab and the Fab fragment of an anti-lambda light chain antibody REGN15499
Method: single particle / : Zhou Y, Franklin MC

PDB-12es:
Cryo-EM structure of BCMA in complex with the BCMA-targeted Fab arm of linvoseltamab and the Fab fragment of an anti-kappa light chain antibody REGN654
Method: single particle / : Zhou Y, Franklin MC

EMDB-72968:
6.9 A map of 3 x FBXO42-SKP1 bound to CCDC6-PP2Ac
Method: single particle / : Michaelian N, Azumaya CM, Hsu PL

EMDB-66758:
Plasmodium vivax Perforin-like protein 2 K735C/E771C mutant(PvPLP2 K735C/E771C) prepore on membrane by cryoET subtomogram averaging
Method: subtomogram averaging / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66759:
Plasmodium vivax Perforin-like protein 2 pore on membrane by cryoET subtomogram averaging
Method: subtomogram averaging / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66760:
Structure of Plasmodium vivax Perforin-like protein2 pore in ring form
Method: single particle / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66761:
Structure of Plasmodium vivax Perforin-like protein2 pore in acr form
Method: single particle / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66353:
cryo-EM structure of a mammalian collagen fibril
Method: single particle / : Lou X, Cong Y, Xu Y, Yan C

EMDB-80344:
Cryo-EM map of the opticin region for the vitreous body collagen fibril at 3.46 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80345:
Cryo-EM map of the S1 inner region for the vitreous body collagen fibril at 3.69 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80346:
Cryo-EM map of the S2 inner region for the vitreous body collagen fibril at 3.18 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80347:
Cryo-EM map of the S3 inner region for the vitreous body collagen fibril at 3.23 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80352:
Cryo-EM map of the S4 inner region for the vitreous body collagen fibril at 3.24 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80353:
Cryo-EM map of the S1 outer region for the vitreous body collagen fibril at 5.02 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80354:
Cryo-EM map of the S2 outer region for the vitreous body collagen fibril at 5.34 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80355:
Cryo-EM map of the S3 outer region for the vitreous body collagen fibril at 3.83 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-80356:
Cryo-EM map of the S4 outer region for the vitreous body collagen fibril at 5.37 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Liu Y, Yan C

EMDB-82367:
Cryo-EM map of the vitreous body collagen fibril at 4.7 angstrom
Method: single particle / : Lou X, Cong Y, Xu Y, Yan C

PDB-9wxp:
cryo-EM structure of a mammalian collagen fibril
Method: single particle / : Lou X, Cong Y, Xu Y, Yan C

EMDB-66278:
Human TOM-TIM22 supercomplex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66279:
Human TIM22 complex wtih substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66280:
Human TOM complex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66281:
Human TOM complex with substrate Tim22-GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more