[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: williams & wb)

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.
Method: single particle / : Acharya P, Parsons R, Janowska K, Williams WB, Alam M, Haynes BF

EMDB-41810:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41820:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41823:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41838:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to partially open HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-27706:
Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

EMDB-27776:
Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

EMDB-26433:
SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Method: single particle / : Stalls V, Acharya P

EMDB-26435:
SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Method: single particle / : Stalls V, Acharya P

EMDB-26436:
SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Method: single particle / : Stalls V, Acharya P

EMDB-26643:
SARS-CoV-2 Omicron-BA.2 1.5-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Method: single particle / : Stalls V, Acharya P

EMDB-26644:
SARS-CoV-2 Omicron-BA.2 1-RBD-up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Method: single particle / : Stalls V, Acharya P

EMDB-26647:
SARS-CoV-2 Omicron-BA.2 1-RBD-up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Method: single particle / : Stalls V, Acharya P

EMDB-25102:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP
Method: single particle / : Binshtein E, Crowe JE

EMDB-25103:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63
Method: single particle / : Binshtein E, Crowe JE

EMDB-25104:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63 (focus refine of the asymmetric unit)
Method: single particle / : Binshtein E, Crowe JE

EMDB-24619:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1024 Fab in complex with HIV-1 Env CH505 SOSIP trimer
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24620:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1025.1 Fab in complex with HIV-1 Env CH505 SOSIP trimer
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24621:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1027 Fab in complex with HIV-1 Env CH505 SOSIP trimer.
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24622:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1028 Fab in complex with HIV-1 Env CH505 SOSIP trimer.
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24623:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH950 Fab in complex with HIV-1 Env CH505 SOSIP trimer.
Method: single particle / : Edwards RJ, Mansouri K

EMDB-23518:
Cryo-EM map of DH851.3 bound to HIV-1 CH505 Env
Method: single particle / : Edwards RJ, Manne K, Acharya P

EMDB-23519:
Cryo-EM map of DH898.1 Fab-dimer bound near the CD4 binding site of HIV-1 Env CH848 SOSIP trimer
Method: single particle / : Edwards RJ, Manne K, Acharya P

EMDB-23152:
Cryo-electron microscopy reconstruction of antibody DH898.1 Fab-dimer bound to glycans 332, 392, and 396 of HIV Env CH848 10.17 SOSIP trimer
Method: single particle / : Edwards RJ, Acharya P

EMDB-23153:
Cryo-electron microscopy local refinement of antibody DH898.1 Fab-dimer bound to glycans 332, 392, and 396 of HIV Env CH848 10.17 SOSIP trimer
Method: single particle / : Edwards RJ, Acharya P

EMDB-23149:
Cryo-electron microscopy reconstruction of antibody DH898.1 Fab-dimer bound near the CD4 binding site of HIV Env SOSIP trimer CH848 10.17
Method: single particle / : Edwards RJ, Acharya P

EMDB-23124:
Cryo-electron microcospy reconstruction of CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 HIV Env
Method: single particle / : Edwards RJ, Acharya P

EMDB-23145:
Cryo-electron microscopy reconstruction of locally refined antibody DH898.1 Fab-dimer
Method: single particle / : Edwards RJ, Acharya P

EMDB-22188:
CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-143 Antibody
Method: single particle / : Williamson LE, Gilliland T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RM, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox J, Diamond MS, Ohi M, Klimstra WB, Crowe JE

EMDB-22223:
CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-33 Antibody
Method: single particle / : Williamson LE, Gilliland T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RM, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox J, Diamond MS, Ohi M, Klimstra WB, Crowe JE

EMDB-23094:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to one copy of domain-swapped antibody 2G12
Method: single particle / : Manne K, Henderson R, Acharya P

EMDB-23095:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to two copies of domain-swapped antibody 2G12
Method: single particle / : Manne K, Henderson R, Acharya P

EMDB-23097:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound domain-swapped antibody 2G12 from masked 3D refinement
Method: single particle / : Manne K, Henderson R, Acharya P

EMDB-22276:
CryoEM structure of Eastern Equine Encephalitis (EEEV) VLP
Method: single particle / : Binshtein E, Crowe JE

EMDB-22277:
CryoEM structure of Eastern Equine Encephalitis (EEEV) VLP with Fab EEEV-143.
Method: single particle / : Binshtein E, Crowe JE

EMDB-22295:
Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP.664
Method: single particle / : Gorman J, Kwong PD

EMDB-20735:
Cryo-EM structure of CH235UCA bound to Man5-enriched CH505.N279K.G458Y.SOSIP.664
Method: single particle / : Acharya P

EMDB-9401:
CH505 SOSIP.664 trimer in complex with DH522.2 Fab
Method: single particle / : Fera D, Harrison SC

EMDB-8507:
92BR SOSIP.664 trimer in complex with DH270.1 Fab
Method: single particle / : Fera D, Harrison SC

EMDB-8543:
3D negative stain EM structure of Pom152, the major component of the membrane ring of the nuclear pore complex
Method: single particle / : Upla P, Kim SJ, Sampathkumar P, Dutta K, Cahill SM, Chemmama IE, Williams R, Bonanno JB, Rice WJ, Stokes DL, Cowburn D, Almo SC, Sali A, Rout MP, Fernandez-Martinez J

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more