[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 135 items for (author: white & ta)

EMDB-19525:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92

PDB-8rvn:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92

EMDB-18946:
Cryo-EM structure of the FIGNL1 AAA hexamer bound to RAD51

PDB-8r64:
Cryo-EM structure of the FIGNL1 AAA hexamer bound to RAD51

EMDB-44635:
Inactive mu opioid receptor bound to Nb6, naloxone and NAM

PDB-9bjk:
Inactive mu opioid receptor bound to Nb6, naloxone and NAM

EMDB-16426:
CryoEM structure of the Hendra henipavirus nucleocapsid sauronoid assembly multimer

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112

PDB-8ekd:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112

EMDB-19024:
Structure of the PNMA2 capsid

EMDB-19025:
Structure of the five-fold capsomer of the PNMA2 capsid

EMDB-19026:
Structure of the three-fold capsomer of the PNMA2 capsid

EMDB-19027:
Structure of the two-fold capsomer of the PNMA2 capsid

PDB-8rb3:
Structure of the PNMA2 capsid

PDB-8rb4:
Structure of the five-fold capsomer of the PNMA2 capsid

PDB-8rb5:
Structure of the three-fold capsomer of the PNMA2 capsid

PDB-8rb7:
Structure of the two-fold capsomer of the PNMA2 capsid

EMDB-43013:
Myxococcus xanthus HEnc-K417N(A) protein shell with icosahedral T=1 symmetry

EMDB-43016:
Myxococcus xanthus HEnc-K417N(A) protein shell with tetrahedral symmetry (12 pentamers, 4 hexamers)

EMDB-43037:
Myxococcus xanthus HEnc-K417N(A) protein shell with D3 symmetry (12 pentamers, 3 hexamers)

EMDB-43038:
Myxococcus xanthus HEnc-K417N(A) protein shell with D6 symmetry (12 pentamers, 8 hexamers)

EMDB-43039:
Myxococcus xanthus HEnc-K417N(A) protein shell with C2 symmetry (12 pentamers, 9 hexamers)

EMDB-43040:
Myxococcus xanthus HEnc-K417N(A) protein shell with D3 symmetry (12 pentamers, 11 hexamers)

EMDB-43041:
Myxococcus xanthus HEnc-K417N(A) protein shell with D2 symmetry (12 pentamers, 12 hexamers)

EMDB-43042:
Myxococcus xanthus HEnc-K417N(A) protein shell with D2 symmetry (12 pentamers, 14 hexamers)

EMDB-43043:
Myxococcus xanthus HEnc-K417N(A) protein shell with D5 symmetry (12 pentamers, 15 hexamers)

EMDB-43113:
Myxococcus xanthus EncA WT protein shell with icosahedral symmetry T=3

EMDB-43036:
Myxococcus xanthus HEnc-K417N(A) protein shell with icosahedral T=3 symmetry

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-16268:
E. coli BAM complex (BamABCDE) bound to darobactin B

EMDB-16282:
E. coli BAM complex (BamABCDE) wild-type

PDB-8bvq:
E. coli BAM complex (BamABCDE) bound to darobactin B

PDB-8bwc:
E. coli BAM complex (BamABCDE) wild-type

EMDB-27824:
Mycobacterium phage Che8

EMDB-27992:
Gordonia phage Ziko

EMDB-28012:
Mycobacterium phage Adephagia

EMDB-28015:
Mycobacterium phage Bobi

EMDB-28016:
Arthrobacter phage Bridgette

EMDB-28017:
Mycobacterium phage Cain

EMDB-28018:
Gordonia phage Cozz

EMDB-28020:
Mycobacterium phage Ogopogo

EMDB-28021:
Microbacterium phage Oxtober96

EMDB-28039:
Mycobacteriophage Muddy capsid

PDB-8e16:
Mycobacterium phage Che8

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more