[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: weiss & eu)

EMDB-51514:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51515:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51516:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqy:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqz:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gr0:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-18997:
Cryo-EM structure of the Sars-Cov2 S trimer without RBDs
Method: single particle / : Effantin G

PDB-8r87:
Cryo-EM structure of the Sars-Cov2 S trimer without RBDs
Method: single particle / : Effantin G

EMDB-17019:
CryoEM Structure INO80core Hexasome complex overall refinement state1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-17023:
CryoEM Structure INO80core Hexasome complex ATPase-hexasome refinement state 1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-17029:
CryoEM Structure INO80core Hexasome complex overall refinement state2
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-17032:
CryoEM Structure INO80 hexasome complex Arp8 module bound to DNA
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-11953:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Composite Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-11954:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 2)
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14810:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Consensus Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14811:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Focused Refinement
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-13776:
Structure of formaldehyde cross-linked SARS-CoV-2 S glycoprotein
Method: single particle / : Sulbaran G, Effantin G

PDB-7q1z:
Structure of formaldehyde cross-linked SARS-CoV-2 S glycoprotein
Method: single particle / : Sulbaran G, Effantin G, Schoehn G, Weissenhorn W

EMDB-11700:
HBV pgRNA T=4 NCP icosahedral symmetry
Method: single particle / : Patel N, Clark S

EMDB-11701:
HBV pgRNA T=4 NCP non-icosahedral symmetry
Method: single particle / : Patel N, Clark S, Weis EU, Mata CP, Bohon J, Farquhar E, Ranson NA, Twarock R, Stockley PG

EMDB-11702:
HBV pgRNA T=4 NCP symmetry expansion + genome focused classification
Method: single particle / : Patel N, Clark S, Weis EU, Mata CP, Bohon J, Farquhar E, Ranson NA, Twarock R, Stockley PG

EMDB-21705:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

PDB-6wkn:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

EMDB-11732:
Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Method: single particle / : Braeuning B, Prabu JR

EMDB-11733:
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Method: single particle / : Braeuning B, Prabu JR

PDB-7ado:
Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Method: single particle / : Braeuning B, Prabu JR, Miller-Vedam LE, Weissman JS, Frost A, Schulman BA

PDB-7adp:
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Method: single particle / : Braeuning B, Prabu JR, Miller-Vedam LE, Weissman JS, Frost A, Schulman BA

PDB-7kra:
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to Fab-DH4 in lipid nanodiscs
Method: single particle / : Miller-Vedam LE, Schirle Oakdale NS, Braeuning B, Boydston EA, Sevillano N, Popova KD, Bonnar JL, Shurtleff MJ, Prabu JR, Stroud RM, Craik CS, Schulman BA, Weissman JS, Frost A

PDB-7ktx:
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to a Fab in DDM detergent
Method: single particle / : Miller-Vedam LE, Schirle Oakdale NS, Braeuning B, Boydston EA, Sevillano N, Popova KD, Bonnar JL, Shurtleff MJ, Prabu JR, Stroud RM, Craik CS, Schulman BA, Weissman JS, Frost A

EMDB-10720:
Cryo-tomography of ESCRT III CHMP4B/CHMP2B filaments bound to liposomes
Method: electron tomography / : Bertin A, de Franceschi N, de la Mora E, Maity S, Miguet N, di Cicco A, Roos W, Mangenot S, Weissenhorn W, Bassereau P

EMDB-3714:
Asymmetric RNA feature in T=4 HBV virus-like particle.
Method: single particle / : Patel N, White SJ, Thompson RF, Bingham R, Weiss EU, Maskell DP, Zlotnick A, Dykeman E, Tuma R, Twarock R, Ranson NA, Stockley PG

EMDB-3715:
T=4 HBV virus-like particle.
Method: single particle / : Patel N, White SJ, Thompson RF, Bingham R, Weiss EU, Maskell DP, Zlotnick A, Dykeman E, Tuma R, Twarock R, Ranson NA, Stockley PG

EMDB-3716:
T=3 HBV virus-like particle.
Method: single particle / : Patel N, White SJ, Thompson RF, Bingham R, Weiss EU, Maskell DP, Zlotnick A, Dykeman E, Tuma R, Twarock R, Ranson NA, Stockley PG

EMDB-5556:
Negative stain electron microscopy structure of Nup192
Method: single particle / : Sampathkumar P, Kim SJ, Upla P, Rice W, Phillips J, Pieper U, Bonanno JB, Fernandez-Martinez J, Ketaren NE, Matsui T, Stokes DL, Sauder JM, Burley SK, Sali A, Rout MP, Almo SC

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more