[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 510 items for (author: wang & ff)

PDB-8p2w:
Structure of human SIT1 (focussed map / refinement)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

PDB-8p2z:
Structure of human SIT1 bound to L-pipecolate (focussed map / refinement)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

PDB-8p30:
Structure of human SIT1:ACE2 complex (open PD conformation) bound to L-pipecolate
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

EMDB-17377:
Structure of human SIT1 (focussed map / refinement)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

EMDB-17378:
Structure of human SIT1:ACE2 complex (open PD conformation)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

EMDB-17379:
Structure of human SIT1:ACE2 complex (closed PD conformation)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

EMDB-17380:
Structure of human SIT1 bound to L-pipecolate (focussed map / refinement)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

EMDB-17381:
Structure of human SIT1:ACE2 complex (open PD conformation) bound to L-pipecolate
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

EMDB-17382:
Structure of human SIT1:ACE2 complex (closed PD conformation) bound to L-pipecolate
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

PDB-8p2x:
Structure of human SIT1:ACE2 complex (open PD conformation)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

PDB-8p2y:
Structure of human SIT1:ACE2 complex (closed PD conformation)
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

PDB-8p31:
Structure of human SIT1:ACE2 complex (closed PD conformation) bound to L-pipecolate
Method: single particle / : Li HZ, Pike ACW, Chi G, Hansen JS, Lee SG, Rodstrom KEJ, Bushell SR, Speedman D, Evans A, Wang D, He D, Shrestha L, Nasrallah C, Chalk R, Moreira T, MacLean EM, Marsden B, Bountra C, Burgess-Brown NA, Dafforn TR, Carpenter EP, Sauer DB

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

PDB-8uwl:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

PDB-8v6u:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

PDB-8sx3:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-36907:
Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris
Method: single particle / : Wang GL, Qi CH, Yu LJ

EMDB-40208:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-40209:
Chlorophyll-binding region of de novo-designed nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

PDB-8glt:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-18373:
cryo-EM structure of apo Clostridioides difficile toxin B
Method: single particle / : Kinsolving J, Bous J, Structural Genomics Consortium (SGC)

EMDB-18374:
cryo-EM structure complex of Frizzled-7 and Clostridioides difficile toxin B
Method: single particle / : Kinsolving J, Bous J

PDB-8qen:
cryo-EM structure of apo Clostridioides difficile toxin B
Method: single particle / : Kinsolving J, Bous J, Structural Genomics Consortium (SGC)

PDB-8qeo:
cryo-EM structure complex of Frizzled-7 and Clostridioides difficile toxin B
Method: single particle / : Kinsolving J, Bous J

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41048:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

PDB-8t5c:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

EMDB-41171:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

EMDB-41172:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, variant-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

PDB-8tdn:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

PDB-8tdo:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, variant-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

EMDB-35727:
Cryo-EM structure of the CRT-LESS RC-LH core complex from roseiflexus castenholzii
Method: single particle / : Wang GL, Qi CH, Yu LJ

EMDB-35721:
Cryo-EM structure of the RC-LH core complex from roseiflexus castenholzii
Method: single particle / : Wang GL, Qi CH, Yu LJ

EMDB-27031:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

EMDB-40926:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

PDB-8cwy:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

PDB-8szz:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

EMDB-29281:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-29282:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flk:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flm:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-41069:
CDPPB-bound inactive mGlu5
Method: single particle / : Krishna Kumar K, Wang H, Kobilka BK

EMDB-41092:
Quis-bound intermediate mGlu5
Method: single particle / : Krishna Kumar K, Wang H, Kobilka BK

EMDB-41099:
Quis-bound intermediate mGlu5
Method: single particle / : Krishna Kumar K, Wang H, Kobilka BK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more