[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 45 items for (author: walter & mr)

EMDB-75696:
1332D4-RBD KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75698:
1332D4 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75725:
1332E5 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75726:
1332E5-RBD KP3.1.1 Complex Local Refine
Method: single particle / : Kizziah JL, Walter MR

PDB-11hm:
1332D4-RBD KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11ho:
1332D4 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11is:
1332E5 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11it:
1332E5-RBD KP3.1.1 Complex Local Refine
Method: single particle / : Kizziah JL, Walter MR

EMDB-71737:
Human 19S proteasome bound to TXNL1 PITH domain without C-terminus
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71740:
Human 26S proteasome bound to TXNL1 with opened gate of core particle
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71741:
Human 26S proteasome bound to TXNL1 with closed gate of core particle
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71791:
Human 19S proteasome regulatory particle (RP) without observing TXNL1 PITH domain bound
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71795:
Human 19S proteasome regulatory particle (RP) without observing TXNL1 PITH domain bound but with extra density adjacent to RPT1/RPT2
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71810:
Human 19S proteasome bound to TXNL1 PITH domain and PSMD5
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71813:
Human 19S proteasome bound to TXNL1 PITH domain but with low density for RPT1, RPT2, and RPN1
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-76283:
Human 19S proteasome bound to TXNL1 PITH domain state 2
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-76415:
Human 19S proteasome regulatory particle bound to TXNL1 PITH domain and p28
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-70507:
HCoV-229E S2P bound by one DH1533 Fab, consensus map
Method: single particle / : Wrapp D

EMDB-70508:
HCoV-229E S2P bound by one DH1533 Fab, focused map
Method: single particle / : Wrapp D

EMDB-70440:
HCoV-229E S2P bound by three DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-70441:
HCoV-229E S2P bound by two DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-70442:
HCoV-229E S2P bound by one DH1533 Fab
Method: single particle / : Wrapp D

PDB-9ofo:
HCoV-229E S2P bound by three DH1533 Fabs
Method: single particle / : Wrapp D

PDB-9ofp:
HCoV-229E S2P bound by two DH1533 Fabs
Method: single particle / : Wrapp D

PDB-9ofq:
HCoV-229E S2P bound by one DH1533 Fab
Method: single particle / : Wrapp D

EMDB-44666:
Cryo-EM of RBD(EG5.1)/1301B7 Fab Complex
Method: single particle / : Walter MR, Green TJ

PDB-9bll:
Cryo-EM of RBD(EG5.1)/1301B7 Fab Complex
Method: single particle / : Walter MR, Green TJ

EMDB-41510:
Eukaryotic translation initiation factor 2B tetramer
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

EMDB-41566:
Eukaryotic translation initiation factor 2B with a mutation (L516A) in the delta subunit
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

PDB-8tqo:
Eukaryotic translation initiation factor 2B tetramer
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

PDB-8tqz:
Eukaryotic translation initiation factor 2B with a mutation (L516A) in the delta subunit
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

EMDB-36294:
Legionella effector protein SidI
Method: single particle / : Wang L, Subramanian A, Mukherjee S, Walter P

PDB-8jhu:
Legionella effector protein SidI
Method: single particle / : Wang L, Subramanian A, Mukherjee S, Walter P

PDB-7p77:
SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 3up conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p78:
SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 1up/1up-out/1down conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p79:
SARS-CoV-2 spike protein in complex with sybodyb#15 in a 1up/1up-out/1down conformation.
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p7a:
SARS-CoV-2 spike protein in complex with sybody#68 in a 2up/1flexible conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p7b:
SARS-CoV-2 spike protein in complex with sybody no68 in a 1up/2down conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

EMDB-22907:
SARS-CoV-2 Spike bound to Nb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF

EMDB-22908:
SARS-CoV-2 Spike bound to Nb6 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22909:
SARS-CoV-2 Spike bound to Nb11 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22910:
SARS-CoV-2 Spike bound to mNb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF

EMDB-22911:
SARS-CoV-2 Spike bound to Nb11 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkk:
SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkl:
SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more