[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 57 items for (author: wakatsuki & s)

PDB-9org:
MicroED structure of apo-form CTX-M-14 beta-lactamase
Method: electron crystallography / : Vlahakis N, Rodriguez JA, Jacobs LMC, Chen Y

PDB-9orh:
MicroED structure of the CTX-M-14 beta-lactamase-avibactam complex from inhibitor cocktail-soaked crystals
Method: electron crystallography / : Vlahakis N, Rodriguez JA, Jacobs LMC, Chen Y

PDB-9orl:
MicroED structure of CTX-M-14 beta-lactamase soaked with avibactam
Method: electron crystallography / : Vlahakis NW, Rodriguez JA, Jacobs LMC, Chen Y

PDB-9ors:
MicroED structure of CTX-M-14 beta-lactamase co-crystallized with avibactam
Method: electron crystallography / : Vlahakis NW, Rodriguez JA, Jacobs LMC, Chen Y

PDB-9orz:
MicroED structure of apo-form lysozyme
Method: electron crystallography / : Vlahakis NW, Flowers CW, Rodriguez JA

PDB-9os0:
MicroED structure of lysozyme complexed with N,N',N"-triacetylchitotriose from cocktail-soaked crystals
Method: electron crystallography / : Vlahakis NW, Flowers CW, Rodriguez JA

PDB-9os1:
MicroED structure of lysozyme co-crystallized with N,N',N"-triacetylchitotriose
Method: electron crystallography / : Vlahakis NW, Flowers CW, Rodriguez JA

PDB-9os8:
MicroED structure of lysozyme soaked with N,N',N"-triacetylchitotriose
Method: electron crystallography / : Vlahakis NW, Flowers CW, Rodriguez JA

PDB-9nbp:
MicroED structure of the papain-E-64 complex from microcrystals mixed on-grid with microarrayed ligand
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nbq:
MicroED structure of papain co-crystallized with E-64D
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nc1:
MicroED structure of papain-E-64 complex from microcrystals soaked with protease inhibitor cocktail
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nca:
MicroED structure of microcrystals soaked with a mixture of E-64, E-64C, and E-64D
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9n9d:
MicroED structure of papain co-crystallized with E-64C
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nae:
MicroED structure of papain co-crystallized with E-64
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nag:
MicroED structure of the apo-form of papain
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nao:
MicroED structure of papain complexed with natural product E64-A65
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

PDB-9nar:
MicroED structure of papain microcrystals soaked with E-64 for 10 minutes
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

PDB-9nax:
MicroED structure of the papain-E-64 complex from microcrystals soaked with crude biosynthetic reaction mixture
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

PDB-9nay:
MicroED structure of papain complexed with natural product E-64-A65 from microcrystals soaked in crude biosynthetic reaction mixture
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

EMDB-41265:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

EMDB-41266:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

PDB-8thi:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

PDB-8thj:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

EMDB-15775:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

PDB-8b01:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

EMDB-33374:
Focused refinement cryo-EM map of the A/B/C subunits of the T=4 lake sinai virus 2 virus-like particle at pH 7.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33375:
Focus refinement cryo-EM map of the D/D/D subunits of the T=4 lake sinai virus 2 virus-like particle
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33376:
Focused refinement cryo-EM map of the A/B/C subunits of the T=3 lake sinai virus 2 virus-like particle at pH 7.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33377:
Focused refinement cryo-EM map of the A/B/C subunits of the T=4 lake sinai virus 2 virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33378:
Focused refinement cryo-EM map of the D/D/D subunits of the T=4 lake sinai virus 2 virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33379:
Focused refinement cryo-EM map of the A/B/C subunits of the T=3 lake sinai virus 2 virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33380:
Focused refinement cryo-EM map of the A/B/C subunits of the T=4 lake sinai virus 2 virus-like particle at pH 8.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33381:
Focused refinement cryo-EM map of the D/D/D subunits of the T=4 lake sinai virus 2 virus-like particle at pH 8.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33382:
Focused refinement cryo-EM map of the A/B/C subunits of the T=3 lake sinai virus 2 virus-like particle at pH 8.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33383:
Focused refinement cryo-EM map of the A/B/C subunits of the T=3 lake sinai virus 1 (delta N-terminal 48 residues) virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33384:
Cryo-EM map of the T=4 lake sinai virus 1 (delta N-terminal 48 residues) virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33368:
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 7.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33369:
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33370:
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33371:
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 8.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33372:
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 8.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33373:
Cryo-EM structure of the T=3 lake sinai virus 1 (delta-N48) virus-like capsid at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

PDB-7xpa:
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 7.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

PDB-7xpb:
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

PDB-7xpd:
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

PDB-7xpe:
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 8.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

PDB-7xpf:
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 8.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

PDB-7xpg:
Cryo-EM structure of the T=3 lake sinai virus 1 (delta-N48) virus-like capsid at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-33190:
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 7.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-13968:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in amphipol
Method: single particle / : North RA, Davies JS, Morado D, Dobson RCJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more