[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 31 items for (author: upla & p)

EMDB-46995:
Mycobacterial supercomplex malate:quinone oxidoreductase assembly
Method: single particle / : Di Trani JM, Rubinstein JL

PDB-9dm1:
Mycobacterial supercomplex malate:quinone oxidoreductase assembly
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-47123:
Cryo-EM structure of Mycobacterium smegmatis ATP synthase rotational state 1 in inverted membrane vesicles - F1 region
Method: single particle / : Courbon GM, Rubinstein JL

EMDB-47124:
Cryo-EM structure of Mycobacterium smegmatis ATP synthase rotational state 1 in inverted membrane vesicles
Method: single particle / : Courbon GM, Rubinstein JL

EMDB-44351:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, V1
Method: single particle / : Coupland EM, Rubinstein JL

PDB-9b8p:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, V1
Method: single particle / : Coupland EM, Rubinstein JL

EMDB-44350:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44352:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, peripheral stalks
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44353:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44354:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 2
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44355:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 1
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9b8o:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9b8q:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, peripheral stalks
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9brb:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 1
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9brc:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 2
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9brd:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-40856:
Single particle reconstruction of the human LINE-1 ORF2p without substrate (apo)
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40858:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40859:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxt:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxu:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-13764:
Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to non-hydrolysable palmitoyl-CoA (Composite Map)
Method: single particle / : Coupland C, Carrique L, Siebold C

PDB-7q1u:
Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to non-hydrolysable palmitoyl-CoA (Composite Map)
Method: single particle / : Coupland C, Carrique L, Siebold C

EMDB-14578:
Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to non-hydrolysable palmitoyl-CoA (Consensus Map)
Method: single particle / : Coupland C, Carrique L, Siebold C

EMDB-13860:
Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to IMP-1575
Method: single particle / : Coupland C, Carrique L

PDB-7q6z:
Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to IMP-1575
Method: single particle / : Coupland C, Carrique L, Siebold C

EMDB-13841:
Focused refinement of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to non-hydrolysable palmitoyl-CoA
Method: single particle / : Coupland C, Carrique L, Siebold C

EMDB-13842:
Focused refinement of Hedgehog acyltransferase (HHAT) in complex with megabody 177 - megabody core
Method: single particle / : Coupland C, Carrique L, Siebold C

EMDB-7321:
Integrative Structure and Functional Anatomy of a Nuclear Pore Complex
Method: subtomogram averaging / : Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

EMDB-8543:
3D negative stain EM structure of Pom152, the major component of the membrane ring of the nuclear pore complex
Method: single particle / : Upla P, Kim SJ, Sampathkumar P, Dutta K, Cahill SM, Chemmama IE, Williams R, Bonanno JB, Rice WJ, Stokes DL, Cowburn D, Almo SC, Sali A, Rout MP, Fernandez-Martinez J

EMDB-5556:
Negative stain electron microscopy structure of Nup192
Method: single particle / : Sampathkumar P, Kim SJ, Upla P, Rice W, Phillips J, Pieper U, Bonanno JB, Fernandez-Martinez J, Ketaren NE, Matsui T, Stokes DL, Sauder JM, Burley SK, Sali A, Rout MP, Almo SC

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more