[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 845 items for (author: tu & ip)

EMDB-49930:
Cryo-EM structure of the glycosyltransferase GtrB in the substrate-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, Bhattacharjee B, di Muccio G, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49931:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-catalysis and product-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49932:
Cryo-EM structure of the glycosyltransferase GtrB in the apo state (octamer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49933:
Cryo-EM structure of the glycosyltransferase GtrB (tetramer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49935:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-intermediate state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyc:
Cryo-EM structure of the glycosyltransferase GtrB in the substrate-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, Bhattacharjee B, di Muccio G, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyd:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-catalysis and product-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nye:
Cryo-EM structure of the glycosyltransferase GtrB in the apo state (octamer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyf:
Cryo-EM structure of the glycosyltransferase GtrB (tetramer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyk:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-intermediate state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-72825:
Human delta opioid receptor complex with mini-Gi and agonist DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72826:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72827:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72828:
receptor focused refinement of human delta opioid receptor complex with mini-Gi and DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72829:
receptor focused refinement of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72830:
receptor focused refinement of human delta opioid receptor complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72831:
conensus map of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72832:
receptor focused refinement of human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

PDB-9ydp:
Human delta opioid receptor complex with mini-Gi and agonist DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

PDB-9ydq:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

PDB-9ydr:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2t:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2u:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-63642:
Structure of SPIN90 dimer-Arp2/3 complex-nucleated actin filament (singlet complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63658:
Structure of SPIN90 dimer-Arp2/3 complexes-nucleated actin filaments (Doublet Complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63880:
Focused Arp2/3 complex map of SPIN90 dimer-Arp2/3 complex-filament singlet complex structure
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63883:
Focused SPIN90-dimer map of SPIN90 dimer-Arp2/3 complex-filament singlet complex structure
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63886:
Focused actin filament map of SPIN90 dimer-Arp2/3 complex-filament singlet complex structure
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63887:
Arp2/3 complex from bottom half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63888:
Arp2/3 complex from the top half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63889:
Focused SPIN90-dimer of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63890:
Focused filament from second half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63891:
Focused filament from one half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

PDB-9m5e:
Structure of SPIN90 dimer-Arp2/3 complex-nucleated actin filament (singlet complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

PDB-9m64:
Structure of SPIN90 dimer-Arp2/3 complexes-nucleated actin filaments (Doublet Complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-45301:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-45302:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

PDB-9c8d:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

PDB-9c8e:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-46649:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9d8v:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-47689:
Cryo-EM structure of NOT1:NOT7:PieF
Method: single particle / : Levdansky E, Deme J, Lea SM, Valkov E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more