[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 941 items for (author: tu & ip)

EMDB-72277:
Cryo-EM map of Plasmodium falciparum 20S proteasome bound to an asparagine-ethylenediamine based inhibitor TDI6245
Method: single particle / : Hsu HC, Li H

PDB-9q6f:
Structure of Plasmodium falciparum 20S proteasome bound to an asparagine-ethylenediamine based inhibitor TDI6245
Method: single particle / : Hsu HC, Li H

EMDB-54904:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54905:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54925:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

EMDB-55037:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55097:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55099:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

EMDB-55105:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-55115:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9shm:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9shn:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9si8:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

PDB-9sml:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spv:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spw:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

PDB-9sq0:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9sqq:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-58100:
In situ chromatosome structure from primary human T cells (C1 symmetry applied)
Method: subtomogram averaging / : Kreysing JP, Majtner T, Turonova B, Beck M

EMDB-58101:
In situ chromatosome structure from primary human T cells (C2 symmetry applied)
Method: subtomogram averaging / : Kreysing JP, Majtner T, Turonova B, Beck M

EMDB-63852:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

PDB-9u4o:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

EMDB-75389:
E.coli 50S ribosomal subunit bound to compound 48a
Method: single particle / : Raskar T, Lee I

PDB-10qm:
E.coli 50S ribosomal subunit bound to compound 48a
Method: single particle / : Raskar T, Lee I

EMDB-72805:
Focused refinement of Macrocystis pyrifera PSI-FCP around PSI
Method: single particle / : Maturana P, Maldonado M

EMDB-72806:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP1
Method: single particle / : Maturana P, Maldonado M

EMDB-72807:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP2
Method: single particle / : Maturana P, Maldonado M

EMDB-72808:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP3
Method: single particle / : Maturana P, Maldonado M

EMDB-72809:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP4
Method: single particle / : Maturana P, Maldonado M

EMDB-72810:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP5
Method: single particle / : Maturana P, Maldonado M

EMDB-72811:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP6
Method: single particle / : Maturana P, Maldonado M

EMDB-72812:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP7
Method: single particle / : Maturana P, Maldonado M

EMDB-72813:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP8
Method: single particle / : Maturana P, Maldonado M

EMDB-72814:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP9
Method: single particle / : Maturana P, Maldonado M

EMDB-72816:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP10
Method: single particle / : Maturana P, Maldonado M

EMDB-72817:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP11
Method: single particle / : Maturana P, Maldonado M

EMDB-72818:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP13
Method: single particle / : Maturana P, Maldonado M

EMDB-72819:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP15
Method: single particle / : Maturana P, Maldonado M

EMDB-72820:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP16
Method: single particle / : Maturana P, Maldonado M

EMDB-72821:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP17
Method: single particle / : Maturana P, Maldonado M

EMDB-72822:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCP19
Method: single particle / : Maturana P, Maldonado M

EMDB-72824:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCPB
Method: single particle / : Maturana P, Maldonado M

EMDB-75351:
Focused refinement of Macrocystis pyrifera PSI-FCP around FCPA
Method: single particle / : Maturana P, Maldonado M

EMDB-76146:
Composite map of Macrocystis pyrifera PSI-FCP supercomplex
Method: single particle / : Maturana P, Maldonado M

EMDB-76202:
Consensus map of Macrocystis pyrifera PSI-FCP supercomplex
Method: single particle / : Maturana P, Maldonado M

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more