[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 17 items for (author: trinick & j)

EMDB-4975:
Haemonchus galactose containing glycoprotein complex
Method: single particle / : Scarff CA, Thompson RF

EMDB-4976:
Haemonchus sialylated galactose containing glycoprotein complex
Method: single particle / : Scarff CA, Thompson RF, Newlands GFJ, Jamson H, Kennaway C, da Silva VJ, Rabelo EM, Song CF, Trinick J, Smith WD, Muench SP

PDB-6row:
Haemonchus galactose containing glycoprotein complex
Method: single particle / : Scarff CA, Thompson RF, Newlands GFJ, Jamson H, Kennaway C, da Silva VJ, Rabelo EM, Song CF, Trinick J, Smith WD, Muench SP

EMDB-8727:
The cryo-ET structure of frozen-hydrated honey bee Z-disk
Method: subtomogram averaging / : Taylor KA, Hu Z

EMDB-3054:
Vacuolar H+-ATPase masked around V1 to account for flexibility
Method: single particle / : Rawson S, Tiburcy F, Trinick J, Wieczorek H, Harrison MA, Muench SP

EMDB-3055:
The vacuolar H+-ATPase masked around Vo
Method: single particle / : Rawson S, Tiburcy F, Trinick J, Wieczorek H, Harrison MA, Muench SP

EMDB-2781:
Structure of the vacuolar H+-ATPase rotary motor at subnanometer resolution
Method: single particle / : Rawson S, Phillips C, Huss M, Tiburcy F, Wieczorek H, Trinick J, Harrison MA, Muench SP

EMDB-2317:
Single particle cryo-microscopy reconstruction of the isolated Manduca sexta V1 domain in complex with subunit C
Method: single particle / : Muench SP, Scheres SHW, Huss M, Phillips C, Vitavska O, Wieczorek H, Trinick J, Harrison MA

EMDB-2318:
Single particle cryo-microscopy reconstruction of the isolated Manduca sexta V1 domain
Method: single particle / : Muench SP, Scheres SHW, Huss M, Phillips C, Vitavska O, Wieczorek H, Trinick J, Harrison MA

EMDB-1890:
EcoR124 Type I DNA restriction-modification enzyme complex in closed state with bound 30bp cognate DNA fragment. 3D reconstruction by single particle analysis from negative stain EM.
Method: single particle / : Kennaway CK, Taylor JE, Song CF, Potrzebowski W, White JH, Swiderska A, Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Bujnicki JM, Trinick J, Kneale GG, Dryden DTF

EMDB-1891:
EcoR124 Type I DNA restriction-modification enzyme complex without DNA (open state). Low resolution 3D reconstruction by single particle analysis from negative stain EM.
Method: single particle / : Kennaway CK, Taylor JE, Song CF, Potrzebowski W, White JH, Swiderska A, Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Bujnicki JM, Trinick J, Kneale GG, Dryden DTF

EMDB-1892:
EcoR124 Type I DNA restriction-modification enzyme complex (in closed state) with bound DNA mimic protein Ocr from phage T7. 3D reconstruction by single particle analysis from negative stain EM.
Method: single particle / : Kennaway CK, Taylor JE, Song CF, Potrzebowski W, White JH, Swiderska A, Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Bujnicki JM, Trinick J, Kneale GG, Dryden DTF

EMDB-1893:
EcoKI Type I DNA restriction-modification enzyme complex in closed state with bound 75bp cognate DNA fragment. 3D reconstruction by single particle analysis from negative stain EM.
Method: single particle / : Kennaway CK, Taylor JE, Song CF, Potrzebowski W, White JH, Swiderska A, Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Bujnicki JM, Trinick J, Kneale GG, Dryden DTF

PDB-2y7c:
Atomic model of the Ocr-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534.
Method: single particle / : Kennaway CK, Obarska-Kosinska A, White JH, Tuszynska I, Cooper LP, Bujnicki JM, Trinick J, Dryden DTF

PDB-2y7h:
Atomic model of the DNA-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534.
Method: single particle / : Kennaway CK, Obarska-Kosinska A, White JH, Tuszynska I, Cooper LP, Bujnicki JM, Trinick J, Dryden DTF

EMDB-1590:
Structure of the Manduca sexta V-ATPase by cryo-electron microscopy
Method: single particle / : Muench SP, Huss M, Phillips C, Song CF, Wieczorek H, Trinick J, Harrison MA

EMDB-1534:
EcoKI type I RM methyltransferase with DNA mimic Ocr. Negative stain 3D.
Method: single particle / : Kennaway CK, Obarska-Kosinska A, White JH, Tuszynska I, Cooper LP, Bujnicki JM, Trinick J, Dryden DTF

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more