[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 289 items for (author: tian & ht)

EMDB-54532:
Cryo-EM structure of Gephyrin in complex with Darpin 27F3, revealing linker-E domain interactions
Method: single particle / : Ortiz-Lopez D, Hove T, Schindelin H, Boettcher B

EMDB-54539:
Gephyrin E-Domain dimer of dimers - Consensus Map
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54540:
Cryo-EM structure of Gephyrin E domain in complex with Darpin 27F3
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54544:
Gephyrin E-Domain dimer of dimers - local refinement of dimer A
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54545:
Gephyrin E-Domain dimer of dimers - local refinement of dimer B
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54551:
Gephyrin dimer of dimers - combined CryoEM map
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

PDB-9s3f:
Cryo-EM structure of Gephyrin in complex with Darpin 27F3, revealing linker-E domain interactions
Method: single particle / : Ortiz-Lopez D, Hove T, Schindelin H, Boettcher B

PDB-9s3m:
Cryo-EM structure of Gephyrin E domain in complex with Darpin 27F3
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

PDB-9s3t:
Gephyrin dimer of dimers - combined CryoEM map
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-64640:
Cryo-EM structure of the nucleosome core particle with site-specific DNA-histone crosslinking
Method: single particle / : Zhou CZ, Li HT, Shan XJ, Ji GY

EMDB-54871:
F-actin in complex with USP54 M1 actin binding motif
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

PDB-9sgk:
F-actin in complex with USP54 M1 actin binding motif
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

PDB-22xc:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-53133:
F-actin decorated by ITPKA
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

PDB-9qgk:
F-actin decorated by ITPKA
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

EMDB-67153:
LolCDE in complex with SMT-738_3
Method: single particle / : Dong CJ, Li HT

EMDB-67112:
LolCDE in complex with SMT-738_1
Method: single particle / : Dong CJ, Li HT

EMDB-67113:
LolCDE in complex with SMT-738_2
Method: single particle / : Dong CJ, Li HT

EMDB-55720:
Cryo-EM reconstruction for n-Tr20U.
Method: single particle / : Mehta R, Glatt S

EMDB-55721:
Cryo-EM structure of nTr20 tRNA
Method: single particle / : Mehta R, Glatt S

EMDB-71751:
Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules (primary mouse thalamus neuronal explant, control)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71752:
Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules (primary mouse thalamus neuronal explant)
Method: electron tomography / : Taira K, Bodakuntla S, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71753:
Cryo-ET reconstruction of a regenerating axon after axotomy showing polymerizing microtubules (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71754:
Cryo-ET reconstruction of a regenerating axon 24 h after axotomy (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71755:
Cryo-ET reconstruction of a regenerating axon 24 h after axotomy (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71840:
Cryo-ET subtomogram averaging of a stress fiber from a regenerating axon
Method: subtomogram averaging / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71750:
In situ microtubule of EpoB-induced regenerating axons
Method: helical / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

PDB-9pnd:
In situ microtubule of EpoB-induced regenerating axons
Method: helical / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-51633:
Cryo-EM structure of Halothiobacillus neapolitanus alpha-carboxysome T=4 mini-shell containing CTD truncated mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Liu LN, Marles-Wright J

EMDB-51641:
Cryo-EM structure of alpha-carboxysome T=4 mini-shell containing CTD only mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Marles-Wright J, Liu L

PDB-9gvc:
Cryo-EM structure of Halothiobacillus neapolitanus alpha-carboxysome T=4 mini-shell containing CTD truncated mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Liu LN, Marles-Wright J

PDB-9gw1:
Cryo-EM structure of alpha-carboxysome T=4 mini-shell containing CTD only mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Marles-Wright J, Liu L

EMDB-70808:
Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Method: single particle / : Lv H, Wu NC

PDB-9osr:
Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Method: single particle / : Lv H, Wu NC

EMDB-45461:
Cryo-EM structure of Candidatus Saccharibacterium phosphoketolase complexed with thiamine diphosphate
Method: single particle / : Singal B, Landwehr G, Jewett MC

EMDB-45462:
Cryo-EM structure of Candidatus Saccharibacterium phosphoketolase complexed with 2-acetyl-thiamine diphosphate
Method: single particle / : Singal B, Landwehr G, Jewett MC

PDB-9cd3:
Cryo-EM structure of Candidatus Saccharibacterium phosphoketolase complexed with thiamine diphosphate
Method: single particle / : Singal B, Landwehr G, Jewett MC

PDB-9cd4:
Cryo-EM structure of Candidatus Saccharibacterium phosphoketolase complexed with 2-acetyl-thiamine diphosphate
Method: single particle / : Singal B, Landwehr G, Jewett MC

EMDB-51067:
Beta carbonic anhydrase CsoSCA from the Halothiobacillus neapolitanus alpha-carboxysome
Method: single particle / : Ng PC, Marles-Wright J, Basle A, Liu L

PDB-9g4t:
Beta carbonic anhydrase CsoSCA from the Halothiobacillus neapolitanus alpha-carboxysome
Method: single particle / : Ng PC, Marles-Wright J, Basle A, Liu L

EMDB-18866:
Phalloidin bound F-actin
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

PDB-8r3h:
Phalloidin bound F-actin
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

EMDB-50741:
Structure of the human two pore domain potassium ion channel THIK-1 (K2P13.1) in a closed conformation
Method: single particle / : Rodstrom KEJ, Tucker SJ

PDB-9ft7:
Structure of the human two pore domain potassium ion channel THIK-1 (K2P13.1) in a closed conformation
Method: single particle / : Rodstrom KEJ, Tucker SJ

EMDB-39596:
cryo-EM structure of carboxysomal midi-shell:icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 19)
Method: single particle / : Wang P, Li JX, Li TP, Li K, Ng PC, Wang SM, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN

EMDB-39597:
cryo-EM structure of carboxysomal midi-shell: icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 16)
Method: single particle / : Wang P, Li JX, LI TP, Li K, Ng PC, Wang SM, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN

EMDB-39598:
cryo-EM structure of carboxysomal midi-shell: icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 9)
Method: single particle / : Wang P, Li JX, Li TP, Li K, Ng PC, Wang SM, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN

EMDB-39599:
cryo-EM structure of carboxysomal midi-shell: assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T=9 Q=12)
Method: single particle / : Wang P, Li JX, Li TP, Li K, Ng PC, Wang SM, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN

EMDB-39601:
cryo-EM structure of carboxysomal midi-shell: icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 13)
Method: single particle / : Wang P, Li JX, Li TP, Li K, Ng PC, Wang SM, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more