[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 359 items for (author: thompson & r)

EMDB-54198:
In-situ structure of cytoplasmic ring of NPC of CEM T lymphoblast cell
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-50018:
Avian reovirus nonstructural protein sigmaNS
Method: single particle / : Tuma R, Aspinall L

EMDB-47480:
Torpedo muscle-type nicotinic acetylcholine receptor - Diliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

EMDB-47481:
Torpedo muscle-type nicotinic acetylcholine receptor - Unliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

EMDB-47482:
Torpedo muscle-type nicotinic acetylcholine receptor - Monoliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

PDB-9e3e:
Torpedo muscle-type nicotinic acetylcholine receptor - Diliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

PDB-9e3f:
Torpedo muscle-type nicotinic acetylcholine receptor - Unliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

PDB-9e3g:
Torpedo muscle-type nicotinic acetylcholine receptor - Monoliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

EMDB-72160:
Cryo-EM structure of ternary complex Ikaros-ZF2:CC-885:CRBN:DDB1 (molecular glue degrader)
Method: single particle / : Zhu J, Pagarigan BE, Tran ET

PDB-9q2d:
Cryo-EM structure of ternary complex Ikaros-ZF2:CC-885:CRBN:DDB1 (molecular glue degrader)
Method: single particle / : Zhu J, Pagarigan BE, Tran ET

EMDB-51920:
KtrA.ADP with a 54ms plunge time on the chameleon.
Method: single particle / : Hirst IJ, Muench SP, Darrow MC, Scarff CA, Thompson RF

EMDB-54199:
In-situ structure of inner ring of NPC of CEM T lymphoblast
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-70841:
Human glutamine synthetase filament under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70842:
Human glutamine synthetase filament bound to ATP
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70843:
Human glutamine synthetase decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70844:
Human glutamine synthetase R298A decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70845:
Human glutamine synthetase filament apo
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otm:
Human glutamine synthetase filament under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otn:
Human glutamine synthetase filament bound to ATP
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9oto:
Human glutamine synthetase decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otp:
Human glutamine synthetase R298A decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otq:
Human glutamine synthetase filament apo
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-52642:
Consensus map of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-52647:
Focused refinement of the large ribosomal subunit of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-52648:
Postprocessed map of the focused refinement of the small ribosomal subunit body of a MLSb sensitive S. aureus strain "KES34"
Method: single particle / : Rivalta A, Yonath A

EMDB-52649:
Postprocessed map of the focused refinement of the small ribosomal subunit head of the MLSb sensitive S. aureus strain "KES34"
Method: single particle / : Rivalta A, Yonath A

EMDB-53066:
Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-53067:
Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

PDB-9qeg:
Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

PDB-9qeh:
Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-51919:
Grid prepared using the vitrobot of KtrA.ADP from B. subtilis, small dataset
Method: single particle / : Hirst IJ, Muench SP

EMDB-51921:
KtrA.ADP with a 100ms plunge time on the chameleon
Method: single particle / : Hirst IJ, Muench SP

EMDB-51922:
KtrA.ADP with a 300ms plunge time on the chameleon
Method: single particle / : Hirst IJ, Muench SP, Darrow MC, Scarff CA, Thompson RF

EMDB-51923:
KtrA.ADP with 2500ms plunge time on the chameleon
Method: single particle / : Hirst IJ, Muench SP, Darrow MC, Scarff CA, Thompson RF

EMDB-51924:
KtrA.ADP with cyclic di-AMP prepared on the vitrobot
Method: single particle / : Hirst IJ, Muench SP, Darrow MC, Scarff CA, Thompson RF

EMDB-51925:
KtrA.ADP, chameleon with 180ms plunge time and DDM added
Method: single particle / : Hirst IJ, Muench SP, Darrow MC, Scarff CA, Thompson RF

EMDB-51926:
KtrA.ADP from chameleon with 2500ms plunge time and DDM added as a surfactant
Method: single particle / : Hirst IJ, Muench SP, Darrow MC, Scarff CA, Thompson RF

EMDB-51927:
KtrA.ADP with cyclic di-AMP from chameleon with 100ms plunge time.
Method: single particle / : Hirst IJ, Muench SP, Darrow MC, Scarff CA, Thompson RF

EMDB-51928:
KtrA.ADP prepared on the vitrobot, full particle stack
Method: single particle / : Hirst IJ, Muench SP

EMDB-53458:
In situ cryo-EM structure of HIV-1 VLP CA hexamer before the nuclear import
Method: subtomogram averaging / : Hou Z, Chen L, Zhang P

EMDB-53459:
In situ cryo-EM structure of HIV-1 VLP hexamer in the NPC
Method: subtomogram averaging / : Hou Z, Chen L, Zhang P

EMDB-53460:
In situ cryo-EM structure of HIV-1 VLP hexamer after the nuclear import
Method: subtomogram averaging / : Hou Z, Chen L, Zhang P

EMDB-52887:
In-situ structure of HIV-1 CA hexamer in NPC
Method: subtomogram averaging / : Zhen H, Peijun Z, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-52888:
In-situ structure of HIV-1 CA hexamer before the nuclear import
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-52889:
In-situ structure of HIV-1 CA hexamer after the nuclear import
Method: subtomogram averaging / : Hou Z, Zhang P, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53083:
Cytoplasmic ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53084:
Inner ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53085:
Luminal ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53086:
Nuclear ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-44407:
The Anti-Mullerian Hormone prodomain in complex with the growth factor and 6E11 Fab in C1 symmetry
Method: single particle / : Howard JA, Thompson TB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more