[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 196 items for (author: sun & sw)

EMDB-64461:
HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA
Method: single particle / : Yang B, Wang Q, Sun SW, Zhang X

EMDB-66011:
Structural Analysis of a Plant Glycoside Hydrolase Family 116 Glucosyl Ceramidase by Cryogenic Electron Microscopy (Cryo-EM)
Method: single particle / : Choknud S, Rungsarityotin W, Ounjai P, Mo-mai P, Wangkanont K, Arthanareeswaran K, Beagbandee C, Ketudat-Cairns JR

PDB-9wiz:
Structural Analysis of a Plant Glycoside Hydrolase Family 116 Glucosyl Ceramidase by Cryogenic Electron Microscopy (Cryo-EM)
Method: single particle / : Choknud S, Rungsarityotin W, Ounjai P, Mo-mai P, Wangkanont K, Arthanareeswaran K, Beagbandee C, Ketudat-Cairns JR

EMDB-63878:
HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-dimer conformation
Method: single particle / : Yang B, Wang Q, Sun SW, Zhang X

EMDB-63881:
HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation 2
Method: single particle / : Yang B, Wang Q, Sun SW, Zhang X

EMDB-63879:
HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1
Method: single particle / : Yang B, Wang Q, Sun SW, Zhang X

EMDB-70233:
Cryo-EM structure of NI06063_d30_103 Fab in complex with influenza virus hemagglutinin from A/Hong Kong/485197/2014 (H3N2)
Method: single particle / : Jo G, Ward AB

EMDB-70234:
Cryo-EM structure of NI06063_d30_103 Fab in complex with influenza virus hemagglutinin from A/Michigan/45/2015 (H1N1)
Method: single particle / : Jo G, Ward AB

EMDB-70235:
Cryo-EM structure of NI04359_d30_240 Fab in complex with influenza virus hemagglutinin from A/Hong Kong/485197/2014 (H3N2)
Method: single particle / : Jo G, Ward AB

EMDB-70236:
Cryo-EM structure of NI04359_d30_240 Fab in complex with influenza virus hemagglutinin from A/Michigan/45/2015 (H1N1)
Method: single particle / : Jo G, Ward AB

PDB-9o8q:
Cryo-EM structure of NI06063_d30_103 Fab in complex with influenza virus hemagglutinin from A/Hong Kong/485197/2014 (H3N2)
Method: single particle / : Jo G, Ward AB

PDB-9o8r:
Cryo-EM structure of NI06063_d30_103 Fab in complex with influenza virus hemagglutinin from A/Michigan/45/2015 (H1N1)
Method: single particle / : Jo G, Ward AB

PDB-9o8s:
Cryo-EM structure of NI04359_d30_240 Fab in complex with influenza virus hemagglutinin from A/Hong Kong/485197/2014 (H3N2)
Method: single particle / : Jo G, Ward AB

PDB-9o8t:
Cryo-EM structure of NI04359_d30_240 Fab in complex with influenza virus hemagglutinin from A/Michigan/45/2015 (H1N1)
Method: single particle / : Jo G, Ward AB

EMDB-62553:
Cryo-EM structure of CtpA from Helicobacter pylori in an all-resting state
Method: single particle / : Sun K, Zhang H, Au SWN

EMDB-62573:
Cryo-EM structure of CtpA S300A/K325A/Q329A mutant from Helicobacter pylori
Method: single particle / : Sun K, Zhang H, Au SWN

EMDB-62576:
Cryo-EM structure of CtpA from Helicobacter pylori in conformation II
Method: single particle / : Sun K, Zhang H, Au SWN

EMDB-62575:
Cryo-EM structure of CtpA from Helicobacter pylori in conformation I
Method: single particle / : Sun K, Zhang H, Au SWN

EMDB-49373:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

EMDB-49405:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1
Method: single particle / : Borst AJ, Weidle C

PDB-9nfu:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

PDB-9nh7:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Method: single particle / : Borst AJ, Weidle C

EMDB-47110:
Cryo-EM structure of a double-loaded SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

EMDB-47127:
Cryo-EM structure of a SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

PDB-9dqb:
Cryo-EM structure of a double-loaded SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

PDB-9drj:
Cryo-EM structure of a SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

EMDB-71819:
Cryo-EM structure of NCLX with calcium (class 3a)
Method: single particle / : Zhang J, Feng L

EMDB-71820:
Cryo-EM structure of NCLX with calcium (class 4a)
Method: single particle / : Zhang J, Feng L

EMDB-71821:
Cryo-EM structure of NCLX at low pH (class 4b)
Method: single particle / : Zhang J, Feng L

EMDB-71822:
Cryo-EM structure of NCLX without calcium (class 1)
Method: single particle / : Zhang J, Feng L

EMDB-71824:
Cryo-EM structure of NCLX without calcium (class 3)
Method: single particle / : Zhang J, Feng L

EMDB-71826:
Cryo-EM structure of NCLX with calcium (class 2a)
Method: single particle / : Zhang J, Feng L

PDB-9ps1:
Cryo-EM structure of NCLX with calcium (class 3a)
Method: single particle / : Zhang J, Feng L

PDB-9ps2:
Cryo-EM structure of NCLX with calcium (class 4a)
Method: single particle / : Zhang J, Feng L

PDB-9ps3:
Cryo-EM structure of NCLX at low pH (class 4b)
Method: single particle / : Zhang J, Feng L

PDB-9ps4:
Cryo-EM structure of NCLX without calcium (class 1)
Method: single particle / : Zhang J, Feng L

PDB-9ps6:
Cryo-EM structure of NCLX without calcium (class 3)
Method: single particle / : Zhang J, Feng L

PDB-9ps8:
Cryo-EM structure of NCLX with calcium (class 2a)
Method: single particle / : Zhang J, Feng L

EMDB-70469:
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Method: single particle / : Ozorowski G, Phulera S, Ward AB

EMDB-70470:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (2x 10E8 Fabs)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-70471:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

PDB-9ogl:
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Method: single particle / : Ozorowski G, Phulera S, Ward AB

PDB-9ogm:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-39984:
Cryo-EM structure of Mycobacteriophage Douge genome-packed vertex (gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39990:
Cryo-EM structure of Mycobacteriophage Douge genome-free vertex (gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-60714:
Cryo-EM structure of Mycobacteriophage Douge genome-packed connector-vertex (gp5, gp8, gp9, gp10, gp12, gp13 and gp113
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-43738:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (consensus map).
Method: single particle / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43739:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43740:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43741:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more