[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,272 items for (author: song & y)

EMDB-66903:
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs (3 RBD up)
Method: single particle / : Liu B, Niu C, Li Z, Yuan H, Xiong X

EMDB-66904:
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs, focused refinement of RBD and Fab region
Method: single particle / : Liu B, Niu C, Li Z, Yuan H, Xiong X

EMDB-75841:
Cryo-electron tomogram of cyanobacteria Prochlorococcus MED4
Method: electron tomography / : Parvate AD, Evans JE

EMDB-66538:
Structure of the old Killifish Ribosome (Consensus map)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66539:
Structure of the old Killifish Ribosome (Small subunit focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66540:
Structure of the old Killifish Ribosome (head focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66541:
Structure of the old Killifish Ribosome (head focus-refined with partial mask)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66542:
Structure of the old Killifish Ribosome (Composite map)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66543:
Structure of the old Killifish Proteasome
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66546:
Structure of the young Killifish Ribosome (Consensus map)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66547:
Structure of the young Killifish Ribosome (small subunit focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66548:
Structure of the young Killifish Ribosome (head focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66549:
Structure of the young Killifish Ribosome (head focus-refined with partial mask)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66550:
Structure of the young Killifish Ribosome (Composite map)
Method: single particle / : Kim J, Song JJ, Kim Y

PDB-9x4d:
Structure of the old Killifish Ribosome
Method: single particle / : Kim J, Song JJ, Kim Y

PDB-9x4e:
Structure of the old Killifish Proteasome
Method: single particle / : Kim J, Song JJ, Kim Y

PDB-9x4i:
Structure of the young Killifish Ribosome
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-67122:
ZnT10 tetramer with zinc
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

EMDB-67133:
ZnT10 dimer with zinc
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

EMDB-67134:
ZnT10 dimer with manganese
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

EMDB-67135:
ZnT10 tetramer with manganese
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

PDB-9xqu:
ZnT10 tetramer with zinc
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

PDB-9xr3:
ZnT10 dimer with zinc
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

PDB-9xr4:
ZnT10 dimer with manganese
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

PDB-9xr5:
ZnT10 tetramer with manganese
Method: single particle / : Mu H, Yang C, Feng R, Wang Y, Song D, Yu H, Chi X

EMDB-65652:
cryo-EM structure of PSII D1-S264V from Thermosynechococcus vestitus BP-1
Method: single particle / : Fan SB, Jiang HW, Kato K, Tsai PC, Jia AQ, Nakajima Y, Sugiura M, Shen JR

EMDB-65724:
cryo-EM structure of PSII PsbA3-S264V in complex with DCMU from Thermosynechococcus vestitus BP-1
Method: single particle / : Fan SB, Jiang HW, Kato K, Tsai PC, Jia AQ, Nakajima Y, Sugiura M, Shen JR

EMDB-65941:
Cryo-EM structure of PSII PsbA3-S264V from Thermosynechococcus vestitus BP-1 (local refinement)
Method: single particle / : Fan SB, Nakajima Y, Shen JR

PDB-9w5b:
cryo-EM structure of PSII D1-S264V from Thermosynechococcus vestitus BP-1
Method: single particle / : Fan SB, Jiang HW, Kato K, Tsai PC, Jia AQ, Nakajima Y, Sugiura M, Shen JR

PDB-9w7d:
cryo-EM structure of PSII PsbA3-S264V in complex with DCMU from Thermosynechococcus vestitus BP-1
Method: single particle / : Fan SB, Jiang HW, Kato K, Tsai PC, Jia AQ, Nakajima Y, Sugiura M, Shen JR

PDB-9wfz:
Cryo-EM structure of PSII PsbA3-S264V from Thermosynechococcus vestitus BP-1 (local refinement)
Method: single particle / : Fan SB, Nakajima Y, Shen JR

EMDB-66668:
Structure of HCoV-229E spike proteins on virions by subtomogram averaging: RBD-closed and S2-compact
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66669:
Structure of the human aminopeptidase N (CD13) ectodomain
Method: single particle / : Liang J, Li S

EMDB-67106:
Structure of HCoV-229E spike proteins on virions by subtomogram averaging: RBD-closed and S2-loose
Method: subtomogram averaging / : Peng C, Liang J, Li S

EMDB-66628:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66645:
Structure of the vesicular stomatitis virus nucleocapsid subbox
Method: subtomogram averaging / : Liu K, Zhang J, Li S

PDB-9x6s:
Structure of Influenza Hemagglutinin (A/Puerto Rico/8/1934)
Method: subtomogram averaging / : Chen Y, Li S

PDB-9x6z:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66732:
Cryo-EM structure of Ceg14 and AnkJ
Method: single particle / : Li Y, Zheng Q, Li S, Wu Y

EMDB-66735:
Cryo-EM structure of Ceg14-AnkJ-Actin complex
Method: single particle / : Li Y, Li S, Zheng Q, Wu Y

EMDB-66822:
Cryo-EM structure of Ceg14 and Actin complex
Method: single particle / : Li Y, Zheng Q, Li S, Wu Y

PDB-9xch:
Cryo-EM structure of Ceg14 and AnkJ
Method: single particle / : Li Y, Zheng Q, Li S

PDB-9xcm:
Cryo-EM structure of Ceg14-AnkJ-Actin complex
Method: single particle / : Li Y, Li S, Zheng Q

PDB-9xfh:
Cryo-EM structure of Ceg14 and Actin complex
Method: single particle / : Li Y, Zheng Q, Li S

EMDB-66141:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

EMDB-66142:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the open state
Method: single particle / : Dong Z, Guan ZY, Wang GR, Yin P

PDB-9wpf:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

PDB-9wpg:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the open state
Method: single particle / : Dong Z, Guan ZY, Wang GR, Yin P

EMDB-66624:
Structure of hemagglutinin from influenza A virions determined by sub-tomogram averaging
Method: subtomogram averaging / : Zhang Z, Chen Y

EMDB-81556:
Human norovirus GII.3 TCH04-577 VP1
Method: single particle / : Song C, Murata K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more