[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,669 items for (author: song & j)

EMDB-66412:
mouse PDCD5-TRiC-ADP complex
Method: single particle / : Song QQ, Cong Y

EMDB-54448:
Cryo-EM structure of activated retron Eco2 (Ec67)
Method: single particle / : Skorupskaite A, Jasnauskaite M, Grigaitis R, Malinauskaite L, Pausch P

EMDB-64015:
CryoEM structure of human Galectin-10 with iTrimbody
Method: single particle / : Song JY, Wang W

PDB-9ubr:
CryoEM structure of human Galectin-10 with iTrimbody
Method: single particle / : Song JY, Wang W

EMDB-63989:
CryoEM structure of GFP-like protein from Aequorea coerulescens with Trimbody
Method: single particle / : Song JY, Wang W

PDB-9uaq:
CryoEM structure of GFP-like protein from Aequorea coerulescens with Trimbody
Method: single particle / : Song JY, Wang W

EMDB-64047:
CryoEM structure of IgV domain of human Nectin-4 with Trimbody
Method: single particle / : Song JY, Wang W

PDB-9ucl:
CryoEM structure of IgV domain of human Nectin-4 with Trimbody
Method: single particle / : Song JY, Wang W

EMDB-67094:
CryoEM structure of LacY with Trimbody
Method: single particle / : Song JY, Wang W

PDB-9xou:
CryoEM structure of LacY with Trimbody
Method: single particle / : Song JY, Wang W

EMDB-52583:
Cryo-EM structure of retron Eco2 (Ec67)
Method: single particle / : Jasnauskaite M, Miksys A, Skorupskaite A, Malinauskaite L, Pausch P

EMDB-52584:
Cryo-EM structure of retron Eco2 (Ec67) in presence of Mg ions
Method: single particle / : Skorupskaite A, Jasnauskaite M, Malinauskaite L, Pausch P

PDB-9i2f:
Cryo-EM structure of retron Eco2 (Ec67)
Method: single particle / : Jasnauskaite M, Miksys A, Skorupskaite A, Malinauskaite L, Pausch P

PDB-9i2g:
Cryo-EM structure of retron Eco2 (Ec67) in presence of Mg ions
Method: single particle / : Skorupskaite A, Jasnauskaite M, Malinauskaite L, Pausch P

EMDB-65825:
Structure of type II Abeta fibrils from 5xFAD mice
Method: helical / : Cao Q, Song M

EMDB-65826:
Structure of Type II Abeta fibrils from AppNL-FPsen1P117L mice
Method: helical / : Cao Q, Song M

EMDB-67622:
Structure of minor species of Abeta fibrils from AppNL-FPsen1P117L mice
Method: helical / : Cao Q, Song M

EMDB-70278:
C3 reconstruction of the thermophilic bacteriophage P74-26 Neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-70279:
C5 reconstruction of the thermophilic bacteriophage P74-26 Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-70280:
C1 reconstruction of the thermophilic bacteriophage P74-26 Portal and Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-70281:
Composite reconstruction of the thermophilic bacteriophage P74-26 Neck and Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-70282:
C3 reconstruction of the thermophilic bacteriophage P74-26 Capsid-less Neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-70283:
C12 reconstruction of the thermophilic bacteriophage P74-26 Neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-70284:
C12 reconstruction of the thermophilic bacteriophage P74-26 Collar-less Neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-72288:
dsDNA in the central channel of the bacteriophage P74-26 neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-72289:
Asymmetric reconstruction of filled phage capsids lacking neck and tail
Method: single particle / : Sedivy EL, Agnello EA, Song K, Xu C, Kelch BA

EMDB-72290:
Asymmetric reconstruction of filled phage capsids with broken tails
Method: single particle / : Sedivy EL, Agnello EA, Song K, Xu C, Kelch BA

PDB-9oab:
C3 reconstruction of the thermophilic bacteriophage P74-26 Neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9oac:
C5 reconstruction of the thermophilic bacteriophage P74-26 Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9oad:
C1 reconstruction of the thermophilic bacteriophage P74-26 Portal and Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9oae:
Composite reconstruction of the thermophilic bacteriophage P74-26 Neck and Portal Vertex
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

PDB-9q7a:
dsDNA in the central channel of the bacteriophage P74-26 neck
Method: single particle / : Sedivy EL, Agnello E, Song K, Xu C, Kelch BA

EMDB-63246:
Cryo-EM structure of SFTSV Gn in complex with ZS004-1C5
Method: single particle / : Bi JH, Zhang YY, Zhou Q, Li DP

EMDB-63247:
Cryo-EM structure of SFTSV Gn in complex with ZS01S-336
Method: single particle / : Bi JH, Zhang YY, Zhou Q, Li DP

EMDB-63248:
Cryo-EM structure of SFTSV Gn in complex with ZS01S-65
Method: single particle / : Bi JH, Zhang YY, Zhou Q, Li DP

EMDB-65405:
The cryo-EM structure of gRNA-bound SPARDA complex
Method: single particle / : Li Y, Jiang Y, Zheng Q, Li S

EMDB-65406:
Helical structure of gRNA-tDNA SPARDA complex
Method: helical / : Li Y, Zheng Q, Li S, Jiang Y

PDB-9vx1:
The cryo-EM structure of gRNA-bound SPARDA complex
Method: single particle / : Li Y, Jiang Y, Zheng Q, Li S

PDB-9vx6:
Helical structure of gRNA-tDNA SPARDA complex
Method: helical / : Li Y, Zheng Q, Li S, Jiang Y

EMDB-53901:
Icosahedral reconstruction of Semliki Forest virus in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53902:
Semliki Forest virus trimer 1 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53903:
Semliki Forest virus trimer 2 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53904:
Composite density map of Semliki Forest virus in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53905:
Icosahedral reconstruction of Semliki Forest virus in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53906:
Semliki Forest virus trimer 1 in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53907:
Semliki Forest virus trimer 2 in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53908:
Composite density map of Semliki Forest virus in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

PDB-9rbq:
Semliki Forest virus trimer 1 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

PDB-9rbr:
Semliki Forest virus trimer 2 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-71814:
Cryo-EM structure of human DNMT3A/3L
Method: single particle / : Lu J, Song J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more