[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,036 items for (author: song & f)

EMDB-53901:
Icosahedral reconstruction of Semliki Forest virus in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53902:
Semliki Forest virus trimer 1 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53903:
Semliki Forest virus trimer 2 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53904:
Composite density map of Semliki Forest virus in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53905:
Icosahedral reconstruction of Semliki Forest virus in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53906:
Semliki Forest virus trimer 1 in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53907:
Semliki Forest virus trimer 2 in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53908:
Composite density map of Semliki Forest virus in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

PDB-9rbq:
Semliki Forest virus trimer 1 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

PDB-9rbr:
Semliki Forest virus trimer 2 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-62660:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62661:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-183
Method: single particle / : Qiu YN, Sun L

EMDB-62680:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62687:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62691:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62729:
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62731:
Focused refinement up-RBD1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62733:
Focused refinement up-RBD2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62734:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62744:
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62745:
Focused refinement trimer1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62746:
Focused refinement trimer2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62777:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

PDB-9kzd:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

PDB-9kze:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-183
Method: single particle / : Qiu YN, Sun L

PDB-9kzz:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

PDB-9l05:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

PDB-9l07:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

PDB-9l15:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

PDB-9l2l:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-66856:
Omicron-specific ultra-potent SARS-CoV-2 neutralizing antibodies targeting the N1/N2 loop of Spike N-terminal domain
Method: single particle / : Li ZQ, Niu X

PDB-9xgo:
Omicron-specific ultra-potent SARS-CoV-2 neutralizing antibodies targeting the N1/N2 loop of Spike N-terminal domain
Method: single particle / : Li ZQ, Niu X

EMDB-62420:
Cryo-EM structure of apo glycine transporter 2 in inward-facing state
Method: single particle / : Wang Y, Zhao Y

EMDB-62421:
Cryo-EM structure of glycine transporter 2 in complex with substrate glycine
Method: single particle / : Wang Y, Zhao Y

EMDB-62422:
Cryo-EM structure of glycine transporter 2 in complex with oleoyl-D-lysine
Method: single particle / : Wang Y, Zhao Y

EMDB-62423:
Cryo-EM structure of Xenopus tropicalis glycine transporter 2 in complex with ALX1393
Method: single particle / : Wang Y, Zhao Y

EMDB-62424:
Cryo-EM structure of glycine transporter 2 in complex with ORG25543
Method: single particle / : Wang Y, Zhao Y

EMDB-62425:
Cryo-EM structure of Xenopus tropicalis glycine transporter 2 in complex with VVZ149
Method: single particle / : Wang Y, Zhao Y

PDB-9km2:
Cryo-EM structure of apo glycine transporter 2 in inward-facing state
Method: single particle / : Wang Y, Zhao Y

PDB-9km3:
Cryo-EM structure of glycine transporter 2 in complex with substrate glycine
Method: single particle / : Wang Y, Zhao Y

PDB-9km4:
Cryo-EM structure of glycine transporter 2 in complex with oleoyl-D-lysine
Method: single particle / : Wang Y, Zhao Y

PDB-9km5:
Cryo-EM structure of Xenopus tropicalis glycine transporter 2 in complex with ALX1393
Method: single particle / : Wang Y, Zhao Y

PDB-9km7:
Cryo-EM structure of glycine transporter 2 in complex with ORG25543
Method: single particle / : Wang Y, Zhao Y

PDB-9km8:
Cryo-EM structure of Xenopus tropicalis glycine transporter 2 in complex with VVZ149
Method: single particle / : Wang Y, Zhao Y

EMDB-38189:
P-hexon capsomer of the VZV C-Capsid
Method: single particle / : Nan W, Lei C, Xiangxi W

EMDB-70190:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan epitope) following mRNA multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70192:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan and gp41-base epitopes) following protein multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-62494:
Cryo-EM structure of RNF168'-RNF168-UbcH5c complex bound to nucleosome
Method: single particle / : Zhu HQ

PDB-9kq2:
Cryo-EM structure of RNF168'-RNF168-UbcH5c complex bound to nucleosome
Method: single particle / : Zhu HQ

EMDB-65115:
Structure of the plant diacylglycerol O-acyltransferase 1 C246A mutant
Method: single particle / : Liu XY, Li JJ, Song DF, Liu ZF

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more