[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 269 items for (author: sia & wr)

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pni:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

PDB-9pnn:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pnu:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq2:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq3:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-72108:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P, Fischer E

PDB-9q0w:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P

EMDB-46758:
Cryo-EM structure of neutralizing murine antibody WS.HSV-1.24 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-46759:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E.DS
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46760:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46761:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-46762:
Cryo-EM structure of gB-Ecto.516P.531E.DS, a prefusion-stabilized HSV-1 glycoprotein B extracellular domain
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46765:
Cryo-EM structure of gB-Ecto.516P, an HSV-1 glycoprotein B extracellular domain
Method: single particle / : Roark RS, Lawrence L, Kwong PD

PDB-9dd6:
Cryo-EM structure of neutralizing murine antibody WS.HSV-1.24 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9dd7:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E.DS
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9dd8:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9dd9:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9dda:
Cryo-EM structure of gB-Ecto.516P.531E.DS, a prefusion-stabilized HSV-1 glycoprotein B extracellular domain
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9ddc:
Cryo-EM structure of gB-Ecto.516P, an HSV-1 glycoprotein B extracellular domain
Method: single particle / : Roark RS, Lawrence L, Kwong PD

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70838:
Rabbit 37496 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70839:
Rabbit 37496 base and gp41-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70840:
Rabbit 37496 base and gp120-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70846:
Rabbit 37496 base and C3V5 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70847:
Rabbit 37450 base, gp41-FP and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70848:
Rabbit 37442 base and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70852:
NHP RJh18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70855:
NHP RUv18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70858:
NHP RUv18 V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70860:
NHP REy18 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-48523:
RM017 Fab in complex with Apex-GT6.2 trimer and RM20A3 Fab
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

EMDB-48078:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

PDB-9ei8:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-44341:
RM038 Fab in complex with Apex-GT 6.2 trimer and RM20A3 Fab
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

EMDB-44342:
RM018 Fab in complex with Apex GT 6.2 trimer and RM20A3 Fab
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

EMDB-70469:
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Method: single particle / : Ozorowski G, Phulera S, Ward AB

EMDB-70470:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (2x 10E8 Fabs)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-70471:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-48079:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Victoria 2011 HA trimer
Method: single particle / : Gorman J, Kwong PD

PDB-9ei9:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Victoria 2011 HA trimer
Method: single particle / : Gorman J, Kwong PD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more