[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 129 items for (author: sherman & m)

EMDB-47837:
Murine norovirus allosteric escape mutant D348E
Method: single particle / : Smith TJ, Sherman M

EMDB-47838:
Murine norovirus allosteric V339I escape mutant + calcium
Method: single particle / : Smith TJ, Sherman MB

EMDB-47839:
MNV Allosteric escape mutant V339I + GCDCA
Method: single particle / : Smith TJ, Sherman M

EMDB-47840:
Murine Norovirus MNV-1 with allosteric escape mutation V339I
Method: single particle / : Smith TJ, Sherman M

PDB-9ean:
Murine norovirus allosteric escape mutant D348E
Method: single particle / : Smith TJ, Sherman M

PDB-9eao:
Murine norovirus allosteric V339I escape mutant + calcium
Method: single particle / : Smith TJ, Sherman MB

PDB-9eap:
MNV Allosteric escape mutant V339I + GCDCA
Method: single particle / : Smith TJ, Sherman M

PDB-9eaq:
Murine Norovirus MNV-1 with allosteric escape mutation V339I
Method: single particle / : Smith TJ, Sherman M

EMDB-43092:
E.coli PNPase in complex with single 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

EMDB-43093:
E.coli PNPase in complex with double 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

PDB-8vah:
E.coli PNPase in complex with single 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

PDB-8vak:
E.coli PNPase in complex with double 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

EMDB-42286:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42355:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42382:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42390:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ui2:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ukm:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8umr:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8un1:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42600:
Murine norovirus in the presence of 1mM calcium
Method: single particle / : Smith TJ

EMDB-42604:
Murine norovirus + 1 mM MgCl2
Method: single particle / : Smith TJ

EMDB-42623:
Murine norovirus dialyzed against EDTA
Method: single particle / : Smith TJ

PDB-8uux:
Murine norovirus capsid protein in the presence of 1mM calcium
Method: single particle / : Smith TJ

PDB-8uv3:
Murine norovirus capsid protein + 1 mM MgCl2
Method: single particle / : Smith TJ

EMDB-42181:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42381:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8uf0:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ump:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-27847:
Mouse norovirus strain CR6, attenuated
Method: single particle / : Smith TJ, Sherman M

EMDB-27849:
Mouse norovirus strain CR6 at pH 5.0
Method: single particle / : Smith TJ

EMDB-27171:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (local refinement of subunit B)
Method: single particle / : Park J, Yin YW

EMDB-27154:
Human mitochondrial DNA polymerase gamma ternary complex with GC basepair
Method: single particle / : Park J, Yin YW

EMDB-27155:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
Method: single particle / : Park J, Yin YW

EMDB-27163:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in intermediate conformer
Method: single particle / : Park J, Yin YW

EMDB-27169:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (consensus)
Method: single particle / : Park J, Yin YW

EMDB-27170:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (local refinement of subunit A and primer/template DNA)
Method: single particle / : Park J, Yin YW

EMDB-27172:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (composite)
Method: single particle / : Park J, Yin YW

PDB-8d33:
Human mitochondrial DNA polymerase gamma ternary complex with GC basepair
Method: single particle / : Park J, Yin YW

PDB-8d37:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
Method: single particle / : Park J, Yin YW

PDB-8d3r:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in intermediate conformer
Method: single particle / : Park J, Yin YW

PDB-8d42:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (composite)
Method: single particle / : Park J, Yin YW

EMDB-27319:
Mouse Norovirus strain WU23
Method: single particle / : Smith TJ

EMDB-27321:
Mouse norovirus strain WU23 + 10mM GCDCA
Method: single particle / : Smith TJ

EMDB-27322:
Murine norovirus strain WU23 at pH 5
Method: single particle / : Smith TJ

EMDB-26553:
N2 sub-domain of IF2 bound to the 30S subunit in the Pseudomonas aeruginosa 70S ribosome initiation complex (focused classification and refinement)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

PDB-7uiu:
N2 sub-domain of IF2 bound to the 30S subunit in the Pseudomonas aeruginosa 70S ribosome initiation complex (focused classification and refinement)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26628:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (I-A)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26629:
Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-A)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26630:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more