[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,870 items for (author: shen & l)

EMDB-73285:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-73287:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75391:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75392:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qq:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qr:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp6:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp8:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-73040:
cryoEM map of Apo Aspergillus fumigatus acetolactate synthase (ALS)
Method: single particle / : Hu Y

EMDB-73041:
cryoEM structure of Aspergillus fumigatus acetolactate synthase (ALS) in complex with a novel inhibitor
Method: single particle / : Hu Y

PDB-9yjz:
cryoEM structure of Apo Aspergillus fumigatus acetolactate synthase (ALS)
Method: single particle / : Hu Y

PDB-9yk0:
cryoEM structure of Aspergillus fumigatus acetolactate synthase (ALS) in complex with a novel inhibitor
Method: single particle / : Hu Y

EMDB-64577:
local ATPase-NCP density map of the ncBAF-nucleosome complex in the ADP-BeFx-bound state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9ux9:
local ATPase-NCP structure of the ncBAF-nucleosome complex in the ADP-BeFx-bound state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-62620:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q, Xia N

EMDB-65522:
Cryo-EM structure of a 1C4 SpyTag-SpyCatcher mi3 nanoparticle
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-65523:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9kwy:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9w14:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-70533:
Human 28S in complex with mtIF2 and mtIF3
Method: single particle / : Kober DL, Wang J

EMDB-70544:
Human mitochondrial 28S PIC with tRNA and mtIF2
Method: single particle / : Kober DL, Wang J

EMDB-63517:
Cryo-EM structure of PTH1R-beta-arrestin1 complex in state 1
Method: single particle / : Zhai X, Guo J, Shen Q, Chen L, Wang G, Shen D, Zhang C, Xu X, Mao C, Zhang Y, Liu Z

PDB-9lz0:
Cryo-EM structure of PTH1R-beta-arrestin1 complex in state 1
Method: single particle / : Zhai X, Guo J, Shen Q, Chen L, Wang G, Shen D, Zhang C, Xu X, Mao C, Zhang Y, Liu Z

EMDB-63518:
Cryo-EM structure of PTH1R-beta-arrestin1 complex in state 2
Method: single particle / : Zhai X, Guo J, Shen Q, Chen L, Wang G, Shen D, Zhang C, Xu X, Mao C, Zhang Y, Liu Z

EMDB-63521:
Cryo-EM structure of PTH1R(V2RC)-beta-arrestin1 complex
Method: single particle / : Zhai X, Guo J, Shen Q, Chen L, Wang G, Shen D, Zhang C, Xu X, Mao C, Zhang Y, Liu Z

PDB-9lz1:
Cryo-EM structure of PTH1R-beta-arrestin1 complex in state 2
Method: single particle / : Zhai X, Guo J, Shen Q, Chen L, Wang G, Shen D, Zhang C, Xu X, Mao C, Zhang Y, Liu Z

PDB-9lz2:
Cryo-EM structure of PTH1R(V2RC)-beta-arrestin1 complex
Method: single particle / : Zhai X, Guo J, Shen Q, Chen L, Wang G, Shen D, Zhang C, Xu X, Mao C, Zhang Y, Liu Z

EMDB-63769:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

PDB-9mb8:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

EMDB-67148:
Local refinement map of the cytoplasmic lattice (CPL) from mouse oocyte at 4.15 angstrom
Method: single particle / : Liu SX, Liu YS, Gao HS, Shen EZ

EMDB-67149:
Local refinement map of the cytoplasmic lattice (CPL) from mouse oocyte at 3.81 angstrom
Method: single particle / : Liu SX, Liu YS, Gao HS, Shen EZ

EMDB-67150:
Local refinement map of the cytoplasmic lattice (CPL) from mouse oocyte at 3.94 angstrom
Method: single particle / : Liu SX, Liu YS, Gao HS, Shen EZ

EMDB-67151:
Local refinement map of the cytoplasmic lattice (CPL) from mouse oocyte at 3.90 angstrom
Method: single particle / : Liu SX, Liu YS, Gao HS, Shen EZ

EMDB-67152:
Local refinement map of the cytoplasmic lattice (CPL) from mouse oocyte at 3.87 angstrom
Method: single particle / : Liu SX, Liu YS, Gao HS, Shen EZ

EMDB-63519:
Cryo-EM structure of transducer in complex with chimeric receptor
Method: single particle / : Zhai X, Mao C, Shen Q, Zang S, Shen D, Zhang H, Chen Z, Wang G, Zhang C, Zhang Y, Liu Z

EMDB-63520:
Cryo-EM structure of chimeric receptor in complex with transduce
Method: single particle / : Zhai X, Mao C, Shen Q, Zang S, Shen D, Zhang H, Chen Z, Wang G, Zhang C, Zhang Y, Liu Z

EMDB-56906:
In situ structure of the open-linker H1-bound nucleosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-65575:
Cryo-EM structure of the Cytoplasmic lattice(CPL) from mouse oocyte
Method: single particle / : Liu SX, Xue JC, Zhang Y, Liu YS, Gao HS, Shen EZ

EMDB-65601:
Cryo-EM map of a 3-repeat filament from mouse oocyte Cytoplasmic Lattice (CPL)
Method: single particle / : Liu SX, Xue JC, Zhang Y, Liu YS, Gao HS, Shen EZ

PDB-9w2m:
Cryo-EM structure of the Cytoplasmic lattice(CPL) from mouse oocyte
Method: single particle / : Liu SX, Xue JC, Zhang Y, Liu YS, Gao HS, Shen EZ

EMDB-64277:
native GluN1/N2B receptor in the fully open state
Method: single particle / : Yu J, Ge JP, Chen JH

EMDB-64278:
native GluN1/N2B receptor in the open state TMD focused map
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64279:
native GluN1/N2A/N2B-s1 consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64280:
native GluN1/N2A/N2B-s1-TMD focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64281:
native GluN1/N2A/N2B-subtype2 consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64283:
native GluN1/N2A/N2B-S2-TMD focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64284:
native GluN1/N2A-subtype 1-TMD focused
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64285:
native GluN1/N2B-subtype1 in closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64289:
native GluN1/N2A-subtype2-consensus map
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64290:
native GluN1/N2A-subtype2-TMD focused map
Method: single particle / : Yu J, Xu RS, Ge JP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more