[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 201 items for (author: saphire & eo)

EMDB-46892:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

PDB-9dhy:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

EMDB-46683:
Polyclonal Immune Complex of Fab binding the Lassa Virus Glycoprotein from serum of Subject-5 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46766:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-8 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46784:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-8 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46809:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-13 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46810:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-11 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46817:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-11 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46851:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-9 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46852:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-9 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46863:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-9 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46864:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-9 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46865:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-9 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46866:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-9 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46882:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-12 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46883:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-12 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46886:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-12 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46887:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-12 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46889:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-12 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46890:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-12 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46891:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-12 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46964:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46965:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-46966:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-47059:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-47060:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-47062:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-47063:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-47064:
Immune complex of Lassa virus glycoprotein (Josiah) with polyclonal Fab from Subject-7 at Day 26
Method: single particle / : Enriquez AS, Saphire EO

EMDB-47065:
Immune complex of Lassa virus glycoprotein (Josiah)
Method: single particle / : Enriquez AS, Saphire EO

EMDB-42521:
Structure of Lassa virus glycoprotein (Josiah) on the surface of VSVdG-Lassa-GPC vaccine particle.
Method: single particle / : Enriquez AS, Saphire EO

EMDB-41072:
Human leukocyte antigen bound by two alloreactive antibody Fabs
Method: single particle / : Kizziah JL, Killian JT, Diaz-Avalos R, Qiu S, Yang G, Green T, Lund FE

EMDB-45833:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45834:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45835:
3A6 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45836:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45837:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45868:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Delta (B.1.617.2) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG, Saphire EO

EMDB-45869:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Mu (B.1.621) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG, Saphire EO

EMDB-46920:
HCMV gH/UL116/UL141 3-mer complex, ectodomain
Method: single particle / : Norris MJ, Benedict CA, Kamil JP, Saphire EO

EMDB-46921:
Local Cryo-EM structure of HCMV gH/UL116 interaction
Method: single particle / : Norris MJ, Benedict CA, Kamil JP, Saphire EO

EMDB-42509:
Intracellular cryo-tomography structure of EBOV nucleocapsid at 8.9 Angstrom
Method: subtomogram averaging / : Watanabe R, Zyla D, Saphire EO

EMDB-42515:
Intracellular Ebola nucleocapsid-like structure obtained from cells expressing NP, VP24 and VP35 at 17.6 angstrom
Method: subtomogram averaging / : Watanabe R, Zyla D, Saphire EO

EMDB-42527:
Pre-fusion Measles virus fusion protein complexed with Fab 77
Method: single particle / : Zyla D, Saphire EO

EMDB-42539:
Structure of the Measles virus Fusion protein in the post-fusion conformation
Method: single particle / : Zyla D, Saphire EO

EMDB-42593:
Structure of the Measles virus Fusion protein in the pre-fusion conformation
Method: single particle / : Zyla D, Saphire EO

EMDB-42595:
Structure of the Measles virus Fusion protein in the pre-fusion conformation with bound [FIP-HRC]2-PEG11
Method: single particle / : Zyla D, Saphire EO

EMDB-43827:
Fab 77-stabilized MeV F ectodomain fragment
Method: single particle / : Zyla D, Saphire EO

PDB-8ut2:
Pre-fusion Measles virus fusion protein complexed with Fab 77
Method: single particle / : Zyla D, Saphire EO

PDB-8utf:
Structure of the Measles virus Fusion protein in the post-fusion conformation
Method: single particle / : Zyla D, Saphire EO

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more