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Showing 1 - 50 of 55 items for author: s. & wu

PDB-6bpq:
Structure of the cold- and menthol-sensing ion channel TRPM8
Method: single particle / : Yin Y, Wu M, Zubcevic L, Borschel WF, Lander GC, Lee SY

PDB-5xs4:
Structure of Coxsackievirus A6 (CVA6) virus A-particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5xs5:
Structure of Coxsackievirus A6 (CVA6) virus procapsid particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Cheng T, Li SW

PDB-5xs7:
Structure of Coxsackievirus A6 (CVA6) virus A-particle in complex with the neutralizing antibody fragment 1D5
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5vgz:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhf:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhh:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhi:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhj:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhm:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhn:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vho:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhp:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhq:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhr:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vhs:
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Method: single particle / : Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5vkq:
Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc
Method: single particle / : Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Chen T, Jan LY, Jan YN, Cheng Y

PDB-5h4p:
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
Method: single particle / : Ma C, Wu S, Li N, Chen Y, Yan K, Li Z, Zheng L, Lei J, Woolford JL, Gao N

PDB-5m0q:
Cryo-EM reconstruction of the maedi-visna virus (MVV) intasome
Method: single particle / : Ballandras-Colas A, Maskell D, Pye VE, Locke J, Swuec S, Kotecha A, Costa A, Cherepanov P

PDB-5t0c:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0g:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0h:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0i:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0j:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5g06:
Cryo-EM structure of yeast cytoplasmic exosome
Method: single particle / : Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW

PDB-3jct:
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Method: single particle / : Wu S, Kumcuoglu B, Yan KG, Brown H, Zhang YX, Tan D, Gamalinda M, Yuan Y, Li ZF, Jakovljevic J, Ma CY, Lei JL, Dong MQ, Woolford Jr JL, Gao N

PDB-5fna:
Cryo-EM reconstruction of caspase-1 CARD
Method: helical / : Li Y, Lu A, Schmidt FI, Yin Q, Chen S, Fu TM, Tong AB, Ploegh HL, Mao Y, Wu H

PDB-3jcd:
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y

PDB-3jce:
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y

PDB-3jbl:
Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization
Method: single particle / : Zhang L, Chen S, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H

PDB-3jad:
Structure of alpha-1 glycine receptor by single particle electron cryo-microscopy, strychnine-bound state
Method: single particle / : Du J, Lu W, Wu SP, Cheng YF, Gouaux E

PDB-3jae:
Structure of alpha-1 glycine receptor by single particle electron cryo-microscopy, glycine-bound state
Method: single particle / : Du J, Lu W, Wu SP, Cheng YF, Gouaux E

PDB-3jaf:
Structure of alpha-1 glycine receptor by single particle electron cryo-microscopy, glycine/ivermectin-bound state
Method: single particle / : Du J, Lu W, Wu SP, Cheng YF, Gouaux E

PDB-4uis:
The cryoEM structure of human gamma-Secretase complex
Method: single particle / : Sun L, Zhao L, Yang G, Yan C, Zhou R, Zhou X, Xie T, Zhao Y, Wu S, Li X, Shi Y

PDB-5a1a:
2.2 A resolution cryo-EM structure of beta-galactosidase in complex with a cell-permeant inhibitor
Method: single particle / : Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne J, Subramaniam S

PDB-3j94:
Structure of ATP-bound N-ethylmaleimide sensitive factor determined by single particle cryoelectron microscopy
Method: single particle / : Zhao M, Wu S, Cheng Y, Brunger AT

PDB-3j95:
Structure of ADP-bound N-ethylmaleimide sensitive factor determined by single particle cryoelectron microscopy
Method: single particle / : Zhao M, Wu S, Cheng Y, Brunger AT

PDB-3j96:
Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State I)
Method: single particle / : Zhao M, Wu S, Cheng Y, Brunger AT

PDB-3j97:
Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State II)
Method: single particle / : Zhao M, Wu S, Cheng Y, Brunger AT

PDB-3j98:
Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State IIIa)
Method: single particle / : Zhao M, Wu S, Cheng Y, Brunger AT

PDB-3j99:
Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State IIIb)
Method: single particle / : Zhao M, Wu S, Cheng Y, Brunger AT

PDB-3j8h:
Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution
Method: single particle / : Yan Z, Bai X, Yan C, Wu J, Scheres SHW, Shi Y, Yan N

PDB-3j6j:
3.6 Angstrom resolution MAVS filament generated from helical reconstruction
Method: helical / : Wu B, Peisley A, Li Z, Egelman E, Walz T, Penczek P, Hur S

PDB-4csu:
Cryo-EM structures of the 50S ribosome subunit bound with ObgE
Method: single particle / : Feng B, Mandava CS, Guo Q, Wang J, Cao W, Li N, Zhang Y, Zhang Y, Wang Z, Wu J, Sanyal S, Lei J, Gao N

PDB-3j08:
High resolution helical reconstruction of the bacterial p-type ATPase copper transporter CopA
Method: helical / : Wu C, Allen GS, Cardozo T, Stokes DL

PDB-3j09:
High resolution helical reconstruction of the bacterial p-type ATPase copper transporter CopA
Method: helical / : Wu C, Allen GS, Cardozo T, Stokes DL

PDB-2x31:
Modelling of the complex between subunits BchI and BchD of magnesium chelatase based on single-particle cryo-EM reconstruction at 7.5 ang
Method: single particle / : Lunqvist J, Elmlund H, Peterson Wulff R, Berglund L, Elmlund D, Emanuelsson C, Hebert H, Willows RD, Hansson M, Lindahl M, Al-Karadaghi S

PDB-2w4v:
Isometrically contracting insect asynchronous flight muscle quick frozen after a quick release step
Method: electron tomography / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4g:
ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A QUICK STRETCH STEP
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

PDB-2w4h:
Isometrically contracting insect asynchronous flight muscle quick frozen after a quick release step
Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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New EM Navigator & Yorodumi

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