[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 41 items for (author: risse & e)

EMDB-71090:
Nanodisc-embedded human TF/FVIIa/XK1 in complex with 10H10 Fab (nanodisc-subtracted)
Method: single particle / : Photenhauer AL, Sedzro JC, Ohi MD, Morrissey JH

EMDB-71093:
Nanodisc-embedded human TF/FVIIa/XK1 in complex with 10H10 Fab
Method: single particle / : Photenhauer AL, Sedzro JC, Morrissey JH, Ohi MD

EMDB-71094:
Nanodisc-embedded human TF/FVIIa/XK1
Method: single particle / : Photenhauer AL, Sedzro JC, Ohi MD, Morrissey JH

EMDB-71095:
Nanodisc-embedded human TF/FVIIa/XK1 in complex with 10H10 Fab (3D Flexible Refinement)
Method: single particle / : Photenhauer AL, Sedzro JC, Morrissey JH, Ohi MD

PDB-9p0x:
Nanodisc-embedded human TF/FVIIa/XK1 in complex with 10H10 Fab (nanodisc-subtracted)
Method: single particle / : Photenhauer AL, Sedzro JC, Ohi MD, Morrissey JH

EMDB-52153:
Cytoplasmic ring of the nuclear pore complex from wild-type mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52154:
Inner ring of the nuclear pore complex from wild-type mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52155:
Nuclear ring of the nuclear pore complex from wild-type mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52156:
Cytoplasmic ring of the nuclear pore complex from Nup133-deficient mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52157:
Inner ring of the nuclear pore complex from Nup133-deficient mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52158:
Nuclear ring of the nuclear pore complex from Nup133-deficient mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52159:
Cytoplasmic ring of the nuclear pore complex from wild-type neural progenitors differentiated from mES cells
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52160:
Inner ring of the nuclear pore complex from wild-type neural progenitors differentiated from mES cells
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52161:
Nuclear ring of the nuclear pore complex from wild-type neural progenitors differentiated from mES cells
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52162:
Cytoplasmic ring of the nuclear pore complex from Nup133-deficient neural progenitors differentiated from mES cells
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52163:
Inner ring of the nuclear pore complex from Nup133-deficient neural progenitors differentiated from mES cells
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52164:
Nuclear ring of the nuclear pore complex from Nup133-deficient neural progenitors differentiated from mES cells
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-46855:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

PDB-9dh3:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

EMDB-37751:
Cryo-EM structure of T. pseudonana PyShell helical tube
Method: helical / : Kawamoto A, Tohda R, Gerle C, Kurisu G

PDB-8wqp:
Cryo-EM structure of T. pseudonana PyShell helical tube
Method: helical / : Kawamoto A, Tohda R, Gerle C, Kurisu G

EMDB-18709:
Subtomogram average of the T. pseudonana PyShell
Method: subtomogram averaging / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18710:
Tomogram of P. tricornutum pyrenoid
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18711:
Tomogram of T. pseudonana pyrenoid
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18712:
Tomogram of PyShell mutant (M1) T. pseudonana
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18713:
Tomogram of PyShell mutant (M2) T. pseudonana
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

EMDB-18841:
Tomogram of T. pseudonana pyrenoid used for subtomogram avergaing
Method: electron tomography / : Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD

PDB-7t3h:
MicroED structure of Dynobactin
Method: electron crystallography / : Yoo BK, Kaiser JT, Rees DC, Miller RD, Iinishi A, Lewis K, Bowman S

EMDB-14242:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S

PDB-7r1w:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S, Maier T

EMDB-13171:
Human Signal Peptidase Complex Paralog A (SPC-A)
Method: single particle / : Liaci AM, Foerster F

EMDB-13172:
Human Signal Peptidase Complex Paralog C (SPC-C)
Method: single particle / : Liaci AM, Foerster F

PDB-7p2p:
Human Signal Peptidase Complex Paralog A (SPC-A)
Method: single particle / : Liaci AM, Foerster F

PDB-7p2q:
Human Signal Peptidase Complex Paralog C (SPC-C)
Method: single particle / : Liaci AM, Foerster F

EMDB-2433:
Amyloid-beta nanotube
Method: single particle / : Nicoll AJ, Panico S, Freir DB, Wright D, Terry C, Risse E, Herron CE, O'Malley T, Wadsworth JD, Farrow MA, Walsh DM, Saibil HR, Collinge J

EMDB-1922:
Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates
Method: single particle / : Strunk BS, Loucks CR, Su M, Vashisth H, Cheng S, Schilling J, BrooksIII CL, Karbstein K, Skiniotis G

EMDB-1923:
Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates
Method: single particle / : Strunk BS, Loucks CR, Su M, Vashisth H, Cheng S, Schilling J, BrooksIII CL, Karbstein K, Skiniotis G

EMDB-1924:
Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates
Method: single particle / : Strunk BS, Loucks CR, Su M, Vashisth H, Cheng S, Schilling J, BrooksIII CL, Karbstein K, Skiniotis G

EMDB-1925:
Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates
Method: single particle / : Strunk BS, Loucks CR, Su M, Vashisth H, Cheng S, Schilling J, BrooksIII CL, Karbstein K, Skiniotis G

EMDB-1926:
Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates
Method: single particle / : Strunk BS, Loucks CR, Su M, Vashisth H, Cheng S, Schilling J, BrooksIII CL, Karbstein K, Skiniotis G

EMDB-1927:
Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates
Method: single particle / : Strunk BS, Loucks CR, Su M, Vashisth H, Cheng S, Schilling J, BrooksIII CL, Karbstein K, Skiniotis G

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more