[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 196 items for (author: ramos & d)

EMDB-54029:
13S proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

EMDB-54032:
13S+Beta1 proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

EMDB-54045:
dimerised 13S-13S+Beta5 proteasome precursor complexes
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

EMDB-54046:
15S proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

EMDB-54047:
13S+Beta5+Beta6 proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

EMDB-54048:
13S+Beta1+Beta5 proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

PDB-9rl3:
13S proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

PDB-9rla:
13S+Beta1 proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

PDB-9rlt:
dimerised 13S-13S+Beta5 proteasome precursor complexes
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

PDB-9rlz:
15S proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

PDB-9rm0:
13S+Beta5+Beta6 proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

PDB-9rm1:
13S+Beta1+Beta5 proteasome precursor complex
Method: single particle / : Mark E, Ramos PC, Nunes MM, Dohmen RJ, Wendler P

EMDB-75195:
S305I Frontotemporal Lobar Degeneration (FTLD) type I tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

EMDB-75196:
S305I Frontotemporal Lobar Degeneration (FTLD) type II tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

PDB-10ij:
S305I Frontotemporal Lobar Degeneration (FTLD) type I tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

PDB-10ik:
S305I Frontotemporal Lobar Degeneration (FTLD) type II tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

EMDB-71776:
CryoEM structure of delta opioid receptor bound to G proteins and Naltrindole
Method: single particle / : Fay JF, Che T

EMDB-71777:
CryoEM structure of delta opioid receptor bound to G proteins and naltrexone
Method: single particle / : Fay JF, Che T

EMDB-71778:
CryoEM structure of delta opioid receptor bound to G proteins and met-enkephalin
Method: single particle / : Fay JF, Che T

EMDB-71779:
CryoEM structure of delta opioid receptor bound to G proteins and SNC80
Method: single particle / : Fay JF, Che T

EMDB-71780:
CryoEM structure of delta opioid receptor bound to G proteins and ADL5859
Method: single particle / : Fay JF, Che T

EMDB-72358:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72359:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72361:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72362:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzj:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzk:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzl:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzm:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-49363:
Cryo-EM map of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Dolce LG, Santos CR, Murakami MT

EMDB-49364:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

PDB-9nfe:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

EMDB-46610:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI, Consensus map
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46611:
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Consensus map
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46583:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic no scFv16, Original map receptor
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46584:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, no scFv16, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46608:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, no scFv16, Consensus map
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46609:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Consensus map
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-48315:
Dodecameric complex of Aedes aegypti RuvBLs1/2 - C1 symmetry
Method: single particle / : Quel NG, Antonio LM, Ramos CHI, Rosa LT

EMDB-42521:
Structure of Lassa virus glycoprotein (Josiah) on the surface of VSVdG-Lassa-GPC vaccine particle.
Method: single particle / : Enriquez AS, Saphire EO

EMDB-44199:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-44247:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

PDB-9b54:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

PDB-9b65:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-44627:
Structure of the SARS-CoV-2 S 6P trimer complex with the human neutralizing antibody Fab fragment, C1533 (local refinement of NTD and C1533)
Method: single particle / : Rubio AA, Abernathy ME, Barnes CO

EMDB-44628:
Structure of the SARS-CoV-2 S 6P trimer complex with the human neutralizing antibody Fab fragment, C1596
Method: single particle / : Rubio AA, Abernathy ME, Barnes CO

EMDB-44629:
Structure of the SARS-CoV-2 S 6P trimer complex with the human neutralizing antibody Fab fragment, C952
Method: single particle / : Rubio AA, Abernathy ME, Barnes CO

PDB-9bj2:
Structure of the SARS-CoV-2 S 6P trimer complex with the human neutralizing antibody Fab fragment, C1533 (local refinement of NTD and C1533)
Method: single particle / : Rubio AA, Abernathy ME, Barnes CO

PDB-9bj3:
Structure of the SARS-CoV-2 S 6P trimer complex with the human neutralizing antibody Fab fragment, C1596
Method: single particle / : Rubio AA, Abernathy ME, Barnes CO

PDB-9bj4:
Structure of the SARS-CoV-2 S 6P trimer complex with the human neutralizing antibody Fab fragment, C952
Method: single particle / : Rubio AA, Abernathy ME, Barnes CO

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more