[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 412 items for (author: panov & k)

EMDB-54068:
SIVtal integrase in complex with RNA stem-loop (focused refinement of the filament repeat unit)
Method: single particle / : Singer MR, Cherepanov P

EMDB-54070:
CryoEM reconstruction of integrase filament at the lumen of native HIV-1 cores (box size 47.3 nm)
Method: single particle / : Cherepanov P, Singer MR, Hope J, Zhang P

EMDB-54071:
CryoEM reconstruction of integrase filament at the lumen of native HIV-1 cores (box size 34.2 nm)
Method: single particle / : Cherepanov P, Singer MR, Hope J, Zhang P

EMDB-55409:
HIV-1 integrase filament at the luminal side of capsid lattice by subtomogram averaging.
Method: subtomogram averaging / : Cherepanov P, Chenavier F, Hope J, Nans A, Zhang P

EMDB-64812:
Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64813:
Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64814:
Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64815:
Phycobilisome core from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64816:
Phycobilisome allophycocyanin hexamer C from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64817:
Phycobilisome rod R1 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64828:
Phycobilisome from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64851:
Phycobilisome from Gloeobacter violaceus PCC 7421, conformation with diverging rods
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64852:
Phycobilisome from Gloeobacter violaceus PCC 7421, conformation with parallel rods
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64868:
Phycobilisome from Gloeobacter violaceus PCC 7421,composite map
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7g:
Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7h:
Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7i:
Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7j:
Phycobilisome core from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7k:
Phycobilisome allophycocyanin hexamer C from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7l:
Phycobilisome rod R1 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-43630:
Focused refinement map for 5-HT2AR bound to Lisuride obtained by cryoEM
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-43631:
Focused refinement map for mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-50092:
HIV-1 envelope glycoprotein (BG505 gp140 SOSIP.664) trimer in complex with three copies of ELC07 broadly neutralizing antibody.
Method: single particle / : Hope J, Alguel Y, Nans A, Cherepanov P

EMDB-50020:
HIV-1 envelope glycoprotein (BG505 gp140 SOSIP.664) trimer in complex with ELC07 broadly neutralizing antibody.
Method: single particle / : Hope J, Alguel Y, Nans A, Cherepanov P

EMDB-50326:
Betaglycan in complex with TGF-b1
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50333:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

EMDB-50519:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50524:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fdy:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

PDB-9fk5:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fkp:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-51460:
Tomogram of aggregate in AgDD-sfGFP-expressing HEK293 cell 6 h post aggregation induction
Method: electron tomography / : Schaefer T, Fernandez-Busnadiego R

EMDB-51461:
Tomogram of aggregate in AgDD-sfGFP-expressing HEK293 cell 10 min post aggregation induction
Method: electron tomography / : Schaefer T, Fernandez-Busnadiego R

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

PDB-8uwl:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-29951:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#1 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29952:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#2 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29953:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#3 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29954:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#4 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29955:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#5 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29956:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#6 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29958:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#7 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29959:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#8 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29960:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#9 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29961:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#10 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29962:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#11 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29964:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#12 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29965:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#13 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29966:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#14 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29967:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#15 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more