[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 33 items for (author: owen & dj)

EMDB-53278:
The structure of the COPI leaf bound to GOLPH3
Method: subtomogram averaging / : Taylor RJ, Tagiltsev G, Ciazynska KA, Briggs JAG

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-14517:
Chimaera of AP2 with FCHO2 linker domain as a fusion on Cmu2 subunit
Method: single particle / : Kane Dickson V, Qu K, Owen DJ, Briggs JA, Zaccai NR

EMDB-14518:
Chimaera of AP2 with FCHO2 linker domain, N1-N2 enriched population
Method: single particle / : Kane Dickson V, Qu K, Owen DJ, Briggs JA, Zaccai NR

EMDB-14525:
AP2 adaptor protein recruited on the membrane in the presence of FCHO2 linker
Method: electron tomography / : Kovtun O, Kaufman JGG, Owen DJ, Briggs JAG

EMDB-14526:
AP2 on the membrane without cargo peptide
Method: subtomogram averaging / : Kovtun O, Kaufman JGG, Owen DJ, Briggs JAG

EMDB-12222:
tomogram of membrane tubules coated with metazoan retromer:SNX3 in the presence of Wls cargo.
Method: electron tomography / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12225:
tomogram of membrane tubules coated with fungal retromer:Grd19 in the presence of Kex2 cargo.
Method: electron tomography / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12221:
VPS26 dimer region of metazoan membrane-assembled retromer:SNX3 complex
Method: subtomogram averaging / : Leneva N, Kovtun O

EMDB-12224:
Vps26 dimer region of the fungal membrane-assembled retromer:Grd19 complex.
Method: subtomogram averaging / : Leneva N, Kovtun O

EMDB-12220:
VPS35/VPS29 arch of metazoan membrane-assembled retromer:SNX3 complex
Method: subtomogram averaging / : Leneva N, Kovtun O

EMDB-12223:
Vps35/Vps29 arch of fungal membrane-assembled retromer:Grd19 complex
Method: subtomogram averaging / : Leneva N, Kovtun O

EMDB-12226:
Vps35/Vps29 arch of fungal membrane-assembled retromer:Vps5 (SNX-BAR) complex.
Method: subtomogram averaging / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-10747:
AP2 core in physiological buffer
Method: single particle / : Kane Dickson V, Kovtun O

EMDB-10748:
AP2 on a membrane containing tyrosine-based cargo peptide
Method: subtomogram averaging / : Kovtun O, Kane Dickson V

EMDB-10749:
AP2 dimer on a membrane containing tyrosine-based cargo peptide
Method: subtomogram averaging / : Kovtun O, Kane Dickson V, Kelly BT, Owen D, Briggs JAG

EMDB-10750:
AP2 in clathrin coats assembled on a membrane containing tyrosine-based cargo peptide
Method: subtomogram averaging / : Kovtun O, Kane Dickson V, Kelly BT, Owen D, Briggs JAG

EMDB-10751:
AP2 in clathrin coats assembled on a membrane containing dileucine- and tyrosine-based cargo peptides
Method: subtomogram averaging / : Kovtun O, Kane Dickson V

EMDB-10752:
Hexagon bounding clathrin leg in clathrin coats assembled on a membrane
Method: subtomogram averaging / : Kovtun O, Kane Dickson V, Kelly BT, Owen D, Briggs JAG

EMDB-10753:
Pentagon bounding clathrin legs in clathrin coats assembled on a membrane
Method: subtomogram averaging / : Kovtun O, Kane Dickson V, Kelly BT, Owen D, Briggs JAG

EMDB-10754:
Clathrin with bound beta2 appendage of AP2
Method: subtomogram averaging / : Kovtun O, Kane Dickson V

EMDB-0154:
Retromer-Vps5: low-resolution overview map centred on the Vps26 dimer.
Method: subtomogram averaging / : Kovtun O, Leneva N, Ariotti N, Rohan TS, Owen DJ, Briggs JAG, Collins BM

EMDB-0155:
Retromer-Vps5: low-resolution overview map centred on the Vps35/29 arch.
Method: subtomogram averaging / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

EMDB-0156:
Retromer-Vps5: map centred on the Vps35/29 arch.
Method: subtomogram averaging / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

EMDB-0157:
Retromer-Vps5: map centred on the leg of the Vps35/29 arch.
Method: subtomogram averaging / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

EMDB-0158:
Retromer-Vps5: map centred on the Vps5 layer under the Vps35/29 arch.
Method: subtomogram averaging / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

EMDB-0159:
Retromer-Vps5: map centred on the Vps5 layer under the Vps26 dimer.
Method: subtomogram averaging / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

EMDB-0160:
Retromer-Vps5: map centred on the Vps26 dimer.
Method: subtomogram averaging / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

EMDB-0161:
Retromer arch structures in the cell.
Method: subtomogram averaging / : Kovtun O, Bykov YS, Schaffer M, Engel ED, Briggs JAG

EMDB-0162:
Retromer-Vps5: membrane tubules, tomogram 7.
Method: electron tomography / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

EMDB-0163:
Retromer-Vps5: membrane tubules, tomogram 70.
Method: electron tomography / : Kovtun O, Leneva N, Ariotti N, Teasdale RD, Owen DJ, Collins BM, Briggs JAG

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more