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Showing all 42 items for (author: onishi & h)

EMDB-63767:
Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-63768:
Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-66460:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

PDB-9x1h:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

EMDB-70473:
Cryo-EM analysis of human H2A.Z on methylated Sat2R-P DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-70474:
Cryo-EM analysis of human H2A.Z on Sat2R-P DNA (v1)
Method: single particle / : Shih RM, Arimura Y

EMDB-70480:
Cryo-EM analysis of human H2A.Z on 601L DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-70481:
Cryo-EM analysis of human H2A.Z on methylated 601L DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-39941:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39942:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an intermediate state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39944:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39954:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-61843:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

PDB-9jvq:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

EMDB-39676:
Cryo-EM structure of cylindrical fiber of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

PDB-8yym:
Cryo-EM structure of cylindrical fiber of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

EMDB-43238:
NPM2-H1.8 isolated from Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

EMDB-43239:
NPM2-H1.8 isolated from Xenopus egg extract (Bent form)
Method: single particle / : Arimura Y, Funabiki H

EMDB-43240:
NPM2-H1.8 isolated from Xenopus egg extract (Stretched form)
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhi:
NPM2-H1.8 isolated from Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhj:
NPM2-H1.8 isolated from Xenopus egg extract (Bent form)
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhk:
NPM2-H1.8 isolated from Xenopus egg extract (Stretched form)
Method: single particle / : Arimura Y, Funabiki H

EMDB-37355:
Cryo-EM structure of helical filament of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

PDB-8w8m:
Cryo-EM structure of helical filament of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

EMDB-34274:
Bre1-nucleosome complex
Method: single particle / : Onishi S, Hamada K, Sato K, Nishizawa T, Nureki O, Ogata K, Sengoku T

EMDB-34275:
Human nucleosome core particle (free form)
Method: single particle / : Onishi S, Sato K, Nishizawa T, Nureki O, Ogata K, Sengoku T

PDB-8gui:
Bre1-nucleosome complex (Model I)
Method: single particle / : Onishi S, Hamada K, Sato K, Nishizawa T, Nureki O, Ogata K, Sengoku T

PDB-8guj:
Bre1-nucleosome complex (Model II)
Method: single particle / : Onishi S, Sato K, Hamada K, Nishizawa T, Nureki O, Ogata K, Sengoku T

PDB-8guk:
Human nucleosome core particle (free form)
Method: single particle / : Onishi S, Sato K, Nishizawa T, Nureki O, Ogata K, Sengoku T

EMDB-34429:
Cryo-EM structure of KpFtsZ-monobody double helical tube
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

EMDB-35344:
Cryo-EM structure of KpFtsZ single filament
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hibino K, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

PDB-8h1o:
Cryo-EM structure of KpFtsZ-monobody double helical tube
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

PDB-8ibn:
Cryo-EM structure of KpFtsZ single filament
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hibino K, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

EMDB-32078:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J

EMDB-32079:
Cryo-EM structure of the SARS-CoV-2 spike protein (3-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-32080:
Cryo-EM structure of the SARS-CoV-2 spike protein (1-up RBD) bound to neutralizing nanobodies P17
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-32081:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P17
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

PDB-7vq0:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-30636:
Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Method: single particle / : Sakuragi T, Kanai R

PDB-7dce:
Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Method: single particle / : Sakuragi T, Kanai R, Tsutsumi A, Narita H, Onishi E, Miyazaki T, Baba T, Nakagawa A, Kikkawa M, Toyoshima C, Nagata S

EMDB-1470:
Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Method: helical / : Popp D, Narita A, Oda T, Fujisawa T, Matsuo H, Nitanai Y, Iwasa M, Maeda K, Onishi H, Maeda Y

PDB-2zhc:
ParM filament
Method: helical / : Popp D, Narita A, Oda T, Fujisawa T, Matsuo H, Nitanai Y, Iwasa M, Maeda K, Onishi H, Maeda Y

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

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  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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