[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 209 items for (author: oger & ca)

EMDB-40812:
Structure of SARS-CoV-2 (HP-GSAS-Mut7) spike in complex with TXG-0078 Fab -Conformation 1
Method: single particle / : Bangaru S, Ward AB

EMDB-40813:
Structure of SARS-CoV-2 (HP-GSAS-Mut7) spike in complex with TXG-0078 Fab -Conformation 2
Method: single particle / : Bangaru S, Ward AB

EMDB-40814:
Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab
Method: single particle / : Bangaru B, Ward A

PDB-8swh:
Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab
Method: single particle / : Bangaru B, Ward A

EMDB-19177:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

PDB-8rhn:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

EMDB-42286:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42355:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42382:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42390:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ui2:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ukm:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8umr:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8un1:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42181:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42381:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8uf0:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ump:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-29722:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

EMDB-29726:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

EMDB-29734:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

PDB-8g4l:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

EMDB-17819:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

EMDB-17849:
XBB 1.0 RBD bound to P4J15 (Global)
Method: single particle / : Duhoo Y, Lau K

EMDB-17850:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

PDB-8pq2:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

PDB-8psd:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-18475:
Cryo-electron tomogram of an induced S2 cell protrusion. The cell was treated with 2uM thapsigargin (5h) and with 2.5uM Cytochalasin D (2h).
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-29700:
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29713:
KRAS G12C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29715:
KRAS G12C complex with GDP and AMG 510 imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29718:
Green Fluorescence Protein imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29719:
KRAS G12V complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29720:
KRAS G13C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g3k:
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g42:
KRAS G12C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g47:
KRAS G12C complex with GDP and AMG 510 imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4e:
Green Fluorescence Protein imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4f:
KRAS G12V complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4h:
KRAS G13C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-27738:
Negative stain EM map of the heterodimeric p110gamma-p84 complex
Method: single particle / : Burke JE, Dalwadi U, Rathinaswamy MK, Yip CK, Nam SE

EMDB-28228:
SARS-CoV-2 spike glycoprotein in complex with the ICO-hu23 neutralizing antibody Fab fragment
Method: single particle / : Yee AW, Morizumi T, Kim K, Kuo A, Ernst OP

PDB-8elj:
SARS-CoV-2 spike glycoprotein in complex with the ICO-hu23 neutralizing antibody Fab fragment
Method: single particle / : Yee AW, Morizumi T, Kim K, Kuo A, Ernst OP

EMDB-17539:
Cryo-EM structure of dimeric UBR5
Method: single particle / : Aguirre JD, Kater L, Kempf G, Cavadini S, Thoma NH

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more