[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 252 items for (author: oger & ca)

EMDB-48223:
De novo designed minibinder complexed with Clostridioides difficile Toxin B
Method: single particle / : Miletic S, Li Z, Ragotte RJ, Melnyk R

PDB-9mf4:
De novo designed minibinder complexed with Clostridioides difficile Toxin B
Method: single particle / : Miletic S, Li Z, Ragotte RJ, Melnyk R

EMDB-48221:
JUNV GP1, GP2, SSP and CR1-28 Fab complex in a pseudotyped virus membrane
Method: single particle / : Taylor LJ, Sawaya MR, Castells-Graells R, Rodriguez JA

EMDB-48781:
JUNV GP1, GP2, SSP complex with neutralizing antibody in a pseudotyped virus membrane
Method: single particle / : Taylor LJ, Sawaya MR, Castells-Graells R, Rodriguez JA

PDB-9mew:
JUNV GP1, GP2, SSP and CR1-28 Fab complex in a pseudotyped virus membrane
Method: single particle / : Taylor LJ, Sawaya MR, Castells-Graells R, Rodriguez JA

PDB-9n0d:
JUNV GP1, GP2, SSP complex with neutralizing antibody in a pseudotyped virus membrane
Method: single particle / : Taylor LJ, Sawaya MR, Castells-Graells R, Rodriguez JA

EMDB-44925:
Structure of the LM189-Bound beta2AR-Gi Complex
Method: single particle / : Casiraghi M, Wang H, Kobilka BK

PDB-9buy:
Structure of the LM189-Bound beta2AR-Gi Complex
Method: single particle / : Casiraghi M, Wang H, Kobilka BK

EMDB-45739:
CryoEM Strucuture of TcdB in complex with De Novo Minibinder fzd48
Method: single particle / : Weidle C, Carr KD, Borst AJ

PDB-9cm5:
CryoEM Strucuture of TcdB in complex with De Novo Minibinder fzd48
Method: single particle / : Weidle C, Carr KD, Borst AJ

EMDB-46004:
Outward-facing OATP1B1 bound to sybody Sb5
Method: single particle / : Sung MW, Lees JA, Han S

EMDB-46005:
Outward-facing Atorvastatin-bound OATP1B1 with sybody Sb5
Method: single particle / : Sung MW, Lees JA, Han S

EMDB-46006:
Outward-facing cyclosporine A-bound OATP1B1 with sybody 5 (Sb5)
Method: single particle / : Sung MW, Lees JA, Han S

PDB-9cy1:
Outward-facing OATP1B1 bound to sybody Sb5
Method: single particle / : Sung MW, Lees JA, Han S

PDB-9cy3:
Outward-facing Atorvastatin-bound OATP1B1 with sybody Sb5
Method: single particle / : Sung MW, Lees JA, Han S

PDB-9cy4:
Outward-facing cyclosporine A-bound OATP1B1 with sybody 5 (Sb5)
Method: single particle / : Sung MW, Lees JA, Han S

EMDB-17980:
Cryo-EM structure of the human BRISC dimer complex bound to compound FX-171-C
Method: single particle / : Chandler F, Zeqiraj E

PDB-8pvy:
Cryo-EM structure of the human BRISC dimer complex bound to compound FX-171-C
Method: single particle / : Chandler F, Zeqiraj E

EMDB-18009:
Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2
Method: single particle / : Chandler F, Zeqiraj E

PDB-8py2:
Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2
Method: single particle / : Chandler F, Zeqiraj E

EMDB-50173:
Trypanosoma brucei nuclear cap-binding complex (CBC) bound to cap0
Method: single particle / : Bernhard H, Dolce LG, Kowalinski E

EMDB-50217:
Trypanosoma brucei nuclear cap-binding complex (CBC) bound to cap4
Method: single particle / : Bernhard H, Warminski M, Dolce LG, Kowalinski E

EMDB-18997:
Cryo-EM structure of the Sars-Cov2 S trimer without RBDs
Method: single particle / : Effantin G

PDB-8r87:
Cryo-EM structure of the Sars-Cov2 S trimer without RBDs
Method: single particle / : Effantin G

EMDB-60355:
Nipah virus polymerase complex
Method: single particle / : Wang YR, Zhang HQ

PDB-8zpv:
Nipah virus polymerase complex
Method: single particle / : Wang YR, Zhang HQ

EMDB-41869:
BG505.664 SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120 glycan hole, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41870:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120-gp120 interface epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41871:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (C3/V5, V1/V2/V3 apex, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41872:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (gp120 glycan hole epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41972:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (CD4bs, C3V5 and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41973:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (gp41GH/FP and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41974:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp41GH/FP and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41975:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp120GH and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41976:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (V1V2V3 and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41977:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8229 (V1V2V3, C3V5, CD4bs, gp41GH/FP and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-41978:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8239 (gp120GH, gp41GH/FP, CD4bs, and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-40796:
BG505 GT1.1 SOSIP in complex with NHP Fabs 12C11 and RM20A3
Method: single particle / : Zhang S, Torres JL, Ozorowski G, Ward AB

PDB-8sw3:
BG505 GT1.1 SOSIP in complex with NHP Fabs 12C11 and RM20A3
Method: single particle / : Zhang S, Torres JL, Ozorowski G, Ward AB

EMDB-40812:
Structure of SARS-CoV-2 (HP-GSAS-Mut7) spike in complex with TXG-0078 Fab -Conformation 1
Method: single particle / : Bangaru S, Ward AB

EMDB-40813:
Structure of SARS-CoV-2 (HP-GSAS-Mut7) spike in complex with TXG-0078 Fab -Conformation 2
Method: single particle / : Bangaru S, Ward AB

EMDB-40797:
BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Zhang S, Ward AB

PDB-8sw4:
BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Zhang S, Ward AB

EMDB-40814:
Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab
Method: single particle / : Bangaru B, Ward A

PDB-8swh:
Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab
Method: single particle / : Bangaru B, Ward A

EMDB-40480:
TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules
Method: single particle / : Anderson JR, Gui M, Brown A

PDB-8sh7:
TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules
Method: single particle / : Anderson JR, Gui M, Brown A

EMDB-19177:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

PDB-8rhn:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

EMDB-42286:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more