[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 337 items for (author: nick & am)

EMDB-19005:
structure of the GLMP/MFSD1 complex
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-19006:
Lysosomal peptide transporter
Method: single particle / : Jungnickel KEJ, Loew C

PDB-8r8q:
Lysosomal peptide transporter
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-18920:
Plastid-encoded RNA polymerase (consensus map)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18935:
Plastid-encoded RNA polymerase
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18952:
Plastid-encoded RNA polymerase transcription elongation complex (consensus map)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18964:
Plastid-encoded RNA polymerase (Region 1)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18965:
Plastid-encoded RNA polymerase (Region 2)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18974:
Plastid-encoded RNA polymerase (Region 3)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18975:
Plastid-encoded RNA polymerase (Region 4)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18976:
Plastid-encoded RNA polymerase (Region 5)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18982:
Plastid-encoded RNA polymerase (Region 6)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18983:
Plastid-encoded RNA polymerase (Region 8)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18985:
Plastid-encoded RNA polymerase (Region 9)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18986:
Plastid-encoded RNA polymerase transcription elongation complex (Region 1)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18995:
Plastid-encoded RNA polymerase transcription elongation complex (Region 2)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18996:
Plastid-encoded RNA polymerase transcription elongation complex (Region 3)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-18998:
Plastid-encoded RNA polymerase (Region 7)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-19007:
Plastid-encoded RNA polymerase transcription elongation complex (Region 4)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-19010:
Plastid-encoded RNA polymerase transcription elongation complex (PAP2-mRNA)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

PDB-8r5o:
Plastid-encoded RNA polymerase
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

PDB-8r6s:
Plastid-encoded RNA polymerase (Integrated model)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

PDB-8rdj:
Plastid-encoded RNA polymerase transcription elongation complex (Integrated model)
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-17111:
Cryo-EM structure of the wild-type alpha-synuclein fibril.
Method: helical / : Pesch V, Reithofer S, Ma L, Flores-Fernandez JM, Oezduezenciler P, Busch Y, Lien Y, Rudtke O, Frieg B, Schroeder GF, Wille H, Tamgueney G

PDB-8oqi:
Cryo-EM structure of the wild-type alpha-synuclein fibril.
Method: helical / : Pesch V, Reithofer S, Ma L, Flores-Fernandez JM, Oezduezenciler P, Busch Y, Lien Y, Rudtke O, Frieg B, Schroeder GF, Wille H, Tamgueney G

EMDB-19023:
Plastid-encoded RNA polymerase transcription elongation complex
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

PDB-8ras:
Plastid-encoded RNA polymerase transcription elongation complex
Method: single particle / : Webster MW, Pramanick I, Vergara-Cruces A

EMDB-42481:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42482:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5 (local refinement of TH-1heptad)
Method: single particle / : Park YJ, Veesler D

EMDB-42483:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-2heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42485:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42486:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5 (local refinement of TH-6heptad)
Method: single particle / : Park YJ, Veesler D

PDB-8ur5:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5 (local refinement of TH-1heptad)
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8ur7:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5 (local refinement of TH-6heptad)
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8fu3:
Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
Method: single particle / : Yu X, Abeywickrema P, Bonneux B, Behera I, Jacoby E, Fung A, Adhikary S, Bhaumik A, Carbajo RJ, Bruyn SD, Miller R, Patrick A, Pham Q, Piassek M, Verheyen N, Shareef A, Sutto-Ortiz P, Ysebaert N, Vlijmen HV, Jonckers THM, Herschke F, McLellan JS, Decroly E, Fearns R, Grosse S, Roymans D, Sharma S, Rigaux P, Jin Z

EMDB-41158:
CS2it1p2_F7K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41180:
Global reconstruction for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-26855:
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Method: single particle / : Ipsaro JJ, Adams DW, Joshua-Tor L

PDB-7ux9:
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Method: single particle / : Ipsaro JJ, Adams DW, Joshua-Tor L

EMDB-40048:
Empty HBV Cp183 capsid with importin-beta
Method: single particle / : Kim C, Schlicksup CJ, Hadden-Perilla JA, Wang JC-Y, Zlotnick A

EMDB-40049:
empty HBV Cp183 capsid with importin-beta, subparticle reconstruction at 2fold location
Method: single particle / : Kim C, Schlicksup CJ, Hadden-Perilla JA, Wang JC-Y, Zlotnick A

PDB-8ghs:
Empty HBV Cp183 capsid with importin-beta, subparticle reconstruction at 2-fold location
Method: single particle / : Kim C, Schlicksup CJ, Hadden-Perilla JA, Wang JC-Y, Zlotnick A

EMDB-16389:
Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea babies) at 2.8 Angstrom resolution
Method: single particle / : Kopecny D, Semchonok DA, Kouril R

PDB-8c29:
Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea abies) at 2.8 Angstrom resolution
Method: single particle / : Kopecny D, Semchonok DA, Kouril R

EMDB-29458:
Alzheimer's disease paired-helical filament in complex with PET tracer GTP-1
Method: helical / : Merz GE, Tse E, Southworth DR

PDB-8fug:
Alzheimer's disease paired-helical filament in complex with PET tracer GTP-1
Method: helical / : Merz GE, Tse E, Southworth DR

EMDB-15244:
Tomogram of an Ebola VLP composed of GP, VP40, NP, VP24 and VP35 at pH 7.4 (Figure 1A-D)
Method: electron tomography / : Winter SL, Chlanda P

EMDB-15268:
Tomogram of an Ebola VLP composed of VP40 at pH 4.5 (Figure 1J)
Method: electron tomography / : Winter SL, Chlanda P

EMDB-15951:
Tomogram of an EBOV-infected Huh7 cell showing a late endosome with internalized EBOV particles
Method: electron tomography / : Winter SL, Chlanda P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more