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Showing 1 - 50 of 61 items for (author: nakamura & t)
![](data/emdb/media/37128/mapi/surf_x.jpg)
EMDB-37128:
Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Koyasu T, Mayanagi K, Yokogawa T, Adachi N, Nakamura T, Senda T, Kakuta Y
![](data/pdb/img/8kd9.jpg)
PDB-8kd9:
Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Koyasu T, Mayanagi K, Yokogawa T, Adachi N, Nakamura T, Senda T, Kakuta Y
![](data/emdb/media/37129/mapi/surf_y.jpg)
EMDB-37129:
Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Adachi N, Yokogawa T, Koyasu T, Mayanagi K, Nakamura T, Senda T, Kakuta Y
![](data/pdb/img/8kda.jpg)
PDB-8kda:
Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Adachi N, Yokogawa T, Koyasu T, Mayanagi K, Nakamura T, Senda T, Kakuta Y
![](data/emdb/media/37465/emdbimg.jpg)
EMDB-37465:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY
![](data/emdb/media/37466/emdbimg.jpg)
EMDB-37466:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY
![](data/pdb/img/8wdu.jpg)
PDB-8wdu:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY
![](data/pdb/img/8wdv.jpg)
PDB-8wdv:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY
![](data/emdb/media/34741/emdbimg.jpg)
EMDB-34741:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/34742/emdbimg.jpg)
EMDB-34742:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11 focused on RBD and NIV-11 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/pdb/img/8hgl.jpg)
PDB-8hgl:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/pdb/img/8hgm.jpg)
PDB-8hgm:
Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/34530/emdbimg.jpg)
EMDB-34530:
Membrane protein A
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE
![](data/emdb/media/34531/emdbimg.jpg)
EMDB-34531:
Membrane protein B
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE
![](data/emdb/media/35713/emdbimg.jpg)
EMDB-35713:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE
![](data/pdb/img/8h86.jpg)
PDB-8h86:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE
![](data/pdb/img/8h87.jpg)
PDB-8h87:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR2 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE
![](data/pdb/img/8iu0.jpg)
PDB-8iu0:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE
![](data/emdb/media/33820/emdbimg.jpg)
EMDB-33820:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 focused on RBD and NIV-8 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33821/emdbimg.jpg)
EMDB-33821:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 1)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33822/emdbimg.jpg)
EMDB-33822:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33823/emdbimg.jpg)
EMDB-33823:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 focused on RBD and NIV-10 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33824/emdbimg.jpg)
EMDB-33824:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 (state 1)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33825/emdbimg.jpg)
EMDB-33825:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33826/emdbimg.jpg)
EMDB-33826:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-10 (state 3)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33827/emdbimg.jpg)
EMDB-33827:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 focused on RBD and NIV-13 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33828/emdbimg.jpg)
EMDB-33828:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 (state 1)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33829/emdbimg.jpg)
EMDB-33829:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/33830/emdbimg.jpg)
EMDB-33830:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-13 (state 3)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/pdb/img/7yh6.jpg)
PDB-7yh6:
Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-8
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/pdb/img/7yh7.jpg)
PDB-7yh7:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y
![](data/emdb/media/34305/emdbimg.jpg)
EMDB-34305:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O, Yamashita K, Nishizawa T, Kato HE
![](data/pdb/img/8gw8.jpg)
PDB-8gw8:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O
![](data/emdb/media/34469/emdbimg.jpg)
EMDB-34469:
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y
![](data/emdb/media/34470/emdbimg.jpg)
EMDB-34470:
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y
![](data/emdb/media/34488/emdbimg.jpg)
EMDB-34488:
Conformation 3 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y
![](data/pdb/img/8h3m.jpg)
PDB-8h3m:
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y
![](data/pdb/img/8h3n.jpg)
PDB-8h3n:
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y
![](data/emdb/media/34859/emdbimg.jpg)
EMDB-34859:
Heteromeric ring comprised of peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C) and TkPrx C46S/F76C/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F76C) (Naph@(MIX|3:3))
Method: single particle / : Himiyama T, Hamaguchi T, Yonekura K, Nakamura T
![](data/pdb/img/8hla.jpg)
PDB-8hla:
Heteromeric ring comprised of peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C) and TkPrx C46S/F76C/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F76C) (Naph@(MIX|3:3))
Method: single particle / : Himiyama T, Hamaguchi T, Yonekura K, Nakamura T
![](data/emdb/media/15954/emdbimg.jpg)
EMDB-15954:
Structure of the IFT-A complex; IFT-A2 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ
![](data/pdb/img/8bbe.jpg)
PDB-8bbe:
Structure of the IFT-A complex; IFT-A2 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ
![](data/pdb/img/8bbg.jpg)
PDB-8bbg:
Structure of the IFT-A complex; anterograde IFT-A train model
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ
![](data/emdb/media/15955/emdbimg.jpg)
EMDB-15955:
Structure of the IFT-A complex; IFT-A1 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ
![](data/pdb/img/8bbf.jpg)
PDB-8bbf:
Structure of the IFT-A complex; IFT-A1 module
Method: single particle / : Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ
![](data/emdb/media/24391/snaps2.jpg)
EMDB-24391:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 7.5
Method: single particle / : Godoy AS, Song Y
![](data/emdb/media/24392/snaps2.jpg)
EMDB-24392:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU in BIS-Tris pH 6.0
Method: single particle / : Godoy AS, Song Y
![](data/pdb/media/7rb0/snapsdep.jpg)
PDB-7rb0:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 7.5
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G
![](data/pdb/media/7rb2/snapsdep.jpg)
PDB-7rb2:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU in BIS-Tris pH 6.0
Method: single particle / : Godoy AS, Song Y, Nakamura AM, Noske GD, Gawriljuk VO, Fernandes RS, Oliva G
![](data/emdb/media/23786/snaps2.jpg)
EMDB-23786:
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 6.0
Method: single particle / : Godoy AS, Song Y
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