[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 9,082 items for (author: mu & z)

EMDB-66629:
Human GPR30 -Gq complex consensus map
Method: single particle / : Kaneda S, Akasaka H, Oshima HS, Shihoya S, Nureki O

EMDB-66630:
Human GPR30 -Gq complex G-protein focused
Method: single particle / : Kaneda S, Akasaka H, Oshima HS, Shihoya S, Nureki O

EMDB-66631:
Human GPR30 -Gq complex receptor focused
Method: single particle / : Kaneda S, Akasaka H, Oshima HS, Shihoya S, Nureki O

EMDB-66632:
Human GPR30 -Gq complex
Method: single particle / : Kaneda S, Oshima HS, Akasaka H, Shihoya W, Nureki O

PDB-9x74:
Human GPR30 -Gq complex
Method: single particle / : Kaneda S, Oshima HS, Akasaka H, Shihoya W, Nureki O

EMDB-81556:
Human norovirus GII.3 TCH04-577 VP1
Method: single particle / : Song C, Murata K

EMDB-81567:
Cryo-EM overall map of the GII.3 VLP in the resting state
Method: single particle / : Song C, Murata K

EMDB-81571:
Focused-refinement map of the AB dimer in the resting-state GII.3 human norovirus VLP
Method: single particle / : Song C, Murata K

EMDB-81575:
Focused-refinement map of the CC dimer in the resting-state GII.3 human norovirus VLP
Method: single particle / : Song C, Murata K

EMDB-81576:
Focused-refinement map of the CC dimer in the rising-state GII.3 human norovirus VLP
Method: single particle / : Song C, Murata K

PDB-27zd:
Human norovirus GII.3 TCH04-577 VP1
Method: single particle / : Song C, Murata K

EMDB-66439:
Cryo-EM Structure of Alcohol Dehydrogenase Variant from Gluconobacter oxydans Truncating Membrane-Binding Regions (Form 1)
Method: single particle / : Ichikawa K, Adachi T, Miyata T, Makino F, Namba K, Kitazumi Y, Shirai O, Sowa K

EMDB-66440:
Cryo-EM Structure of Alcohol Dehydrogenase Variant from Gluconobacter oxydans Truncating Membrane-Binding Regions (Form 2)
Method: single particle / : Ichikawa K, Adachi T, Miyata T, Makino F, Namba K, Kitazumi Y, Shirai O, Sowa K

PDB-9x0q:
Cryo-EM Structure of Alcohol Dehydrogenase Variant from Gluconobacter oxydans Truncating Membrane-Binding Regions (Form 1)
Method: single particle / : Ichikawa K, Adachi T, Miyata T, Makino F, Namba K, Kitazumi Y, Shirai O, Sowa K

PDB-9x0r:
Cryo-EM Structure of Alcohol Dehydrogenase Variant from Gluconobacter oxydans Truncating Membrane-Binding Regions (Form 2)
Method: single particle / : Ichikawa K, Adachi T, Miyata T, Makino F, Namba K, Kitazumi Y, Shirai O, Sowa K

EMDB-72649:
Leucine Rich Repeat Kinase 2 bound to GMP-PNP (inactive)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-72656:
Leucine Rich Repeat Kinase 2 bound to GMP-PNP (active)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-72751:
LRRK2 asymmetric dimer
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-72756:
Leucine Rich Repeat Kinase 2 activate state (Apo ROC state 2)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-72762:
Leucine Rich Repeat Kinase 2 activate state (Apo ROC state 1)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-72768:
Leucine Rich Repeat Kinase 2 R1441C mutant (active)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-72940:
LRRK2 activated (flexible C-terminus)
Method: single particle / : Villagran Suarez AC, Bodrug T

EMDB-72941:
Leucine Rich Repeat Kinase 2 bound to GDP (from GMPPNP data)
Method: single particle / : Villagran A, Bodrug T

EMDB-72978:
Leucine Rich Repeat LRRK2 (GDP data)
Method: single particle / : Villagran Suarez A, Bodrug T

EMDB-72982:
Leucine Rich Repeat Kinase 2 active state (Apo state 3)
Method: single particle / : Villagran Suarez A, Bodrug T

EMDB-73484:
Focused refinement map on N-terminal half of LRRK2 GMPPNP (active)-Resolved EM
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-73485:
Focused refinement map on N-terminal half of LRRK2 bound to GMPPNP (active)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-73487:
LRRK2 bound to GMP-PNP (inactive)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-73491:
Focused refinement map on LRRK2 bound to GMPPNP (inactive)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-73492:
Focused refinement map on LRRK2 bound to GMPPNP (inactive) Resolve EM
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-73495:
Focused refinement map of LRRK2 APO state 2
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-73496:
Focused refinement map of LRRK2 APO state 1
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

EMDB-73497:
Focused map of LRRK2 bound to G10 (top)
Method: single particle / : Villagran AV, Bodrug T, Leschziner A

EMDB-73499:
Focused map of LRRK2 bound to G10 (WD40-DARPin)
Method: single particle / : Villagran AV, Bodrug T, Leschziner A

EMDB-73501:
Focused map of LRRK2 R1441C (active)
Method: single particle / : Villagran Suarez A, Bodrug T

EMDB-73502:
Focused map of LRRK2 R1441C (active) ResolveEM
Method: single particle / : Villagran Suarez A, Bodrug T

PDB-9y7a:
Leucine Rich Repeat Kinase 2 bound to GMP-PNP (inactive)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

PDB-9y7i:
Leucine Rich Repeat Kinase 2 bound to GMP-PNP (active)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

PDB-9ybl:
LRRK2 asymmetric dimer
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

PDB-9ybp:
Leucine Rich Repeat Kinase 2 activate state (Apo ROC state 2)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

PDB-9yc8:
Leucine Rich Repeat Kinase 2 activate state (Apo ROC state 1)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

PDB-9ycd:
Leucine Rich Repeat Kinase 2 R1441C mutant (active)
Method: single particle / : Villagran Suarez A, Bodrug T, Leschziner A

PDB-9ygt:
Leucine Rich Repeat Kinase 2 bound to GDP (from GMPPNP data)
Method: single particle / : Villagran A, Bodrug T

EMDB-56538:
Structure of the human two pore domain potassium ion channel TASK-3 L122V mutant (K2P9.1)
Method: single particle / : Hall PR, Rodstrom KEJ, Tucker SJ

EMDB-70604:
Full-length LRRK2 autoinhibited
Method: single particle / : Villagran-Suarez AC, Bodrug T

EMDB-70981:
Full length LRRK2 bound to G10 DARPin
Method: single particle / : Villagran AV, Bodrug T, Leschziner A

EMDB-70982:
Full-length LRRK2 autonhibited (flexible)
Method: single particle / : Villagran-Suarez A, Bodrug T, Alegrio-Louro J, Leschziner A

EMDB-71012:
Full LRRK2 (R1441C mutant) after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

EMDB-72555:
Full length LRRK2 after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

EMDB-72556:
Full length LRRK2 (G2019S) after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more