[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 54 items for (author: miller & aj)

EMDB-48263:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-48288:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

EMDB-48289:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mgy:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mie:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

PDB-9mig:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-46855:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

PDB-9dh3:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

EMDB-47241:
Cryo-EM structure of hemagglutinin H5 A/Texas/37/2024 in complex with LSTa and antibody CR9114
Method: single particle / : Fernandez-Quintero ML, Han J, Rodriguez AJ, Ward AB

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9asd:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9au2:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-45181:
The structure of two MntR dimers bound to the native mnep promoter sequence.
Method: single particle / : Shi H, Fu Y, Glasfeld A, Ahuja S

EMDB-45182:
The structure of 4 MntR homodimers bound to the promoter sequence of mnep.
Method: single particle / : Shi H, Fu Y, Glasfeld A, Ahuja S

EMDB-17362:
Homotypic interacting B1 fab bound to Chondroitin Sulfate A
Method: single particle / : Raghavan SSR, Dagil R, Wang KT, Salanti A

PDB-8p2e:
Homotypic interacting B1 fab bound to Chondroitin Sulfate A
Method: single particle / : Raghavan SSR, Dagil R, Wang KT, Salanti A

EMDB-44642:
Cholecystokinin 1 receptor (CCK1R) Y140A mutant, Gq chimera (mGsqi) complex
Method: single particle / : Cary BP, Harikumar KG, Zhao P, Desai AJ, Mobbs JM, Toufaily C, Furness SGB, Christopoulos A, Belousoff MJ, Wootten D, Sexton PM, Miller LJ

EMDB-44643:
Cholecystokinin 1 receptor (CCK1R) sterol 7M mutant, Gq chimera (mGsqi) complex
Method: single particle / : Harikumar KG, Zhao P, Cary BP, Xu X, Desai AJ, Mobbs JI, Toufaily C, Furness SGB, Christopoulos A, Belousoff MJ, Wootten D, Sexton PM, Miller LJ

EMDB-29452:
Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
Method: single particle / : Yu X, Abeywickrema P, Bonneux B, Behera I, Jacoby E, Fung A, Adhikary S, Bhaumik A, Carbajo RJ, Bruyn SD, Miller R, Patrick A, Pham Q, Piassek M, Verheyen N, Shareef A, Sutto-Ortiz P, Ysebaert N, Vlijmen HV, Jonckers THM, Herschke F, McLellan JS, Decroly E, Fearns R, Grosse S, Roymans D, Sharma S, Rigaux P, Jin Z

PDB-8fu3:
Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
Method: single particle / : Yu X, Abeywickrema P, Bonneux B, Behera I, Jacoby E, Fung A, Adhikary S, Bhaumik A, Carbajo RJ, Bruyn SD, Miller R, Patrick A, Pham Q, Piassek M, Verheyen N, Shareef A, Sutto-Ortiz P, Ysebaert N, Vlijmen HV, Jonckers THM, Herschke F, McLellan JS, Decroly E, Fearns R, Grosse S, Roymans D, Sharma S, Rigaux P, Jin Z

EMDB-17539:
Cryo-EM structure of dimeric UBR5
Method: single particle / : Aguirre JD, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-17540:
Cryo-EM structure of full-length human UBR5 (homotetramer)
Method: single particle / : Aguirre JD, Kater L, Kempf G, Cavadini S, Thoma NH

PDB-8p82:
Cryo-EM structure of dimeric UBR5
Method: single particle / : Aguirre JD, Kater L, Kempf G, Cavadini S, Thoma NH

PDB-8p83:
Cryo-EM structure of full-length human UBR5 (homotetramer)
Method: single particle / : Aguirre JD, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-17542:
Negative stain map of UBR5 (dimer) in complex with RARA/RXRA
Method: single particle / : Aguirre JD, Cavadini S, Kempf G, Kater L, Thoma NH

EMDB-16872:
Subtomogram average of long bridges of the yeast ER-mitochondria encounter structure (ERMES). The population half containing longer bridge structures was averaged.
Method: subtomogram averaging / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

EMDB-16873:
Subtomogram average of bridges of the yeast ER-mitochondria encounter structure (ERMES)
Method: subtomogram averaging / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

EMDB-16871:
Subtomogram average of short bridges of the yeast ER-mitochondria encounter structure (ERMES). The population half containing shorter bridge structures was averaged.
Method: subtomogram averaging / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

EMDB-15355:
Electron cryo-tomography of the ER-mitochondria encounter structure ERMES
Method: electron tomography / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

PDB-7t3h:
MicroED structure of Dynobactin
Method: electron crystallography / : Yoo BK, Kaiser JT, Rees DC, Miller RD, Iinishi A, Lewis K, Bowman S

EMDB-14242:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S

PDB-7r1w:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S, Maier T

EMDB-13967:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

EMDB-13962:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 2
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

EMDB-13963:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 3
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

EMDB-13965:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1
Method: single particle / : Rebelo-Guiomar P, Pellegrino S

EMDB-13966:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 5
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

EMDB-11732:
Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Method: single particle / : Braeuning B, Prabu JR

EMDB-11733:
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Method: single particle / : Braeuning B, Prabu JR

EMDB-23003:
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to Fab-DH4 in lipid nanodiscs
Method: single particle / : Miller-Vedam LE, Schirle Oakdale NS

EMDB-23033:
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to a Fab in DDM detergent
Method: single particle / : Miller-Vedam LE, Schirle Oakdale NS

PDB-7ado:
Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Method: single particle / : Braeuning B, Prabu JR, Miller-Vedam LE, Weissman JS, Frost A, Schulman BA

PDB-7adp:
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Method: single particle / : Braeuning B, Prabu JR, Miller-Vedam LE, Weissman JS, Frost A, Schulman BA

PDB-7kra:
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to Fab-DH4 in lipid nanodiscs
Method: single particle / : Miller-Vedam LE, Schirle Oakdale NS, Braeuning B, Boydston EA, Sevillano N, Popova KD, Bonnar JL, Shurtleff MJ, Prabu JR, Stroud RM, Craik CS, Schulman BA, Weissman JS, Frost A

PDB-7ktx:
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to a Fab in DDM detergent
Method: single particle / : Miller-Vedam LE, Schirle Oakdale NS, Braeuning B, Boydston EA, Sevillano N, Popova KD, Bonnar JL, Shurtleff MJ, Prabu JR, Stroud RM, Craik CS, Schulman BA, Weissman JS, Frost A

EMDB-22265:
Cryo-EM structure of BCL6 bound to BI-3802
Method: single particle / : Yoon H, Burman SSR

PDB-6xmx:
Cryo-EM structure of BCL6 bound to BI-3802
Method: single particle / : Yoon H, Burman SSR, Hunkeler M, Nowak RP, Fischer ES

EMDB-21920:
Cryo-EM structure of Bacillus subtilis RNA Polymerase elongation complex
Method: single particle / : Newing T, Tolun G

EMDB-21921:
Cryo-EM structure of Bacillus subtilis RNA Polymerase in complex with HelD
Method: single particle / : Newing T, Tolun G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more