[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 198 items for (author: liu & jk)

EMDB-46785:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46786:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46787:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46789:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), tail focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46791:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-53474:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

PDB-9qzq:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

EMDB-63903:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-63933:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-48283:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48286:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48287:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48290:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48291:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-70490:
BG505 GT1.1 SOSIP in complex with gp41-base epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70491:
BG505 GT1.1 SOSIP in complex with V1V2V3 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70492:
BG505 GT1.1 SOSIP in complex with C3V5 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70493:
BG505 GT1.1 SOSIP in complex with CD4bs epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70494:
BG505 GT1.1 SOSIP in complex with gp41 glycan hole epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70495:
BG505 GT1.1 SOSIP in complex with gp41 fusion peptide epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

PDB-9mi0:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mia:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mib:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mih:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mii:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-43648:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map receptor
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43649:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43652:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43653:
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map receptor
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43654:
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43556:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43557:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43558:
Kappa opioid receptor in complex with heterotrimerig Gi protein, bound to inverse agonist GB18
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46585:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic , no scFv16
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-8vve:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-8vvf:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-8vvg:
Kappa opioid receptor in complex with heterotrimerig Gi protein, bound to inverse agonist GB18
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-9d61:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic , no scFv16
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-62350:
G1 mononucleosome, no cryoprotectant
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-62351:
G1 mononucleosome, with glycerol cryoprotectant
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-62352:
G1 nucleosome with gyre proximal density, with glycerol cryoprotectant
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-38238:
Cryo-EM structure of Cas12o1, crRNA and target DNA complex
Method: single particle / : Zhang X

EMDB-38239:
Cryo-EM structure of Cas12o1 (E100K), crRNA and target DNA complex
Method: single particle / : Zhang X

EMDB-37004:
Oligonucleosome 0 DMSO
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-37005:
Oligonucleosome 9% DMSO
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36992:
G1 dinucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36993:
G1 mononucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36994:
G1 nucleosome gyre proximal
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36998:
Metaphase dinucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36999:
Metaphase mononucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more