[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 28,470 items for (author: li & y)

EMDB-18549:
Ammonium Transporter Amt1 from Shewanella denitrificans
Method: single particle / : Gschell M, Zhang L, Einsle O, Andrade S

PDB-8qpf:
Ammonium Transporter Amt1 from Shewanella denitrificans
Method: single particle / : Gschell M, Zhang L, Einsle O, Andrade S

EMDB-37756:
Cryo-EM structure of bsAb3 Fab-Gn-Gc complex
Method: single particle / : Wu Y, Sun JQ

PDB-8wqw:
Cryo-EM structure of bsAb3 Fab-Gn-Gc complex
Method: single particle / : Wu Y, Sun JQ

EMDB-17197:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19108:
Human TPC2 in Complex withAntagonist (R)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

PDB-8ouo:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19638:
YlmH bound to PtRNA-50S
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-19641:
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Method: single particle / : Paternoga H, Wilson DN

PDB-8s1p:
YlmH bound to PtRNA-50S
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8s1u:
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Method: single particle / : Paternoga H, Wilson DN

EMDB-44639:
HCMV A-capsid vertex
Method: single particle / : Zhou H, Stevens A

EMDB-44640:
HCMV B-capsid vertex
Method: single particle / : Zhou H, Stevens A

EMDB-44647:
HCMV AD169 pp150 R40E, R251E, K255E A-capsid vertex
Method: single particle / : Zhou H, Stevens A

EMDB-44648:
HCMV AD169 pp150 R40E, R251E, K255E B-capsid vertex
Method: single particle / : Zhou H, Stevens A

PDB-8tym:
Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state
Method: helical / : Jimah JR, Canagarajah BJ, Hinshaw JE

PDB-8tyn:
Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state (tetramer model)
Method: helical / : Jimah JR, Canagarajah BJ, Hinshaw JE

EMDB-37754:
Fe-O nanocluster of form-IX in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

EMDB-37755:
Fe-O nanocluster of form-VIII in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

EMDB-37757:
Fe-O nanocluster of form-X in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

EMDB-37758:
Fe-O nanocluster of form-XI in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

EMDB-37759:
Fe-O nanocluster of form-XII in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

PDB-8wqu:
Fe-O nanocluster of form-IX in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

PDB-8wqv:
Fe-O nanocluster of form-VIII in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

PDB-8wqx:
Fe-O nanocluster of form-X in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

PDB-8wqy:
Fe-O nanocluster of form-XI in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

PDB-8wr0:
Fe-O nanocluster of form-XII in the 4-fold channel of Ureaplasma diversum ferritin
Method: single particle / : Wang WM, Ma DY, Gong WJ, Wu LJ, Wang HF

EMDB-29022:
Reconstituted chromatin condensed by the PRC1-CBX8 complex
Method: electron tomography / : Uckelmann M, Taveneau C, Levina V, de Marco A, Davidovich C

EMDB-36461:
Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Method: single particle / : Jia X, Zhang Q, Li S, Guo J

EMDB-34608:
NARROW LEAF 1-open from Japonica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

PDB-8hat:
NARROW LEAF 1-open from Japonica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

EMDB-36466:
FCP trimer in diatom Thalassiosira pseudonana
Method: single particle / : Feng Y, Li Z, Zhou CC, Liu C, Shen JR, Wang W

PDB-8jp3:
FCP trimer in diatom Thalassiosira pseudonana
Method: single particle / : Feng Y, Li Z, Zhou CC, Liu C, Shen JR, Wang W

EMDB-50356:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50357:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50359:
Rhodobacter microvirus Ebor attached to B10 host cell reconstructed by single particle analysis with applied C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50360:
Rhodobacter microvirus Ebor attached to the outer membrane vesicle
Method: subtomogram averaging / : Bardy P, Blaza JN, Jenkins HT, Nicholas TR, Konig HC, Alim NTB, Hart SJ, Turkenburg JP, Fogg PCM, Beatty JT, Antson AA

EMDB-50361:
Rhodobacter microvirus Ebor attached to the host cell reconstructed by subtomogram averaging
Method: subtomogram averaging / : Bardy P, Traore DAK, Blaza JN, Jenkins HT, Nicholas TR, Hart SJ, Turkenburg JP, Fogg PCM, Antson AA

EMDB-40968:
Atomic model of the mammalian Mediator complex with MED26 subunit
Method: single particle / : Zhao H, Asturias F

EMDB-40972:
CryoEM map of TR-TRAP
Method: single particle / : Zhao H, Asturias F

EMDB-38148:
Cryo-EM structure of the cortistatin 17-bound Somatostatin receptor 5-Gi protein complex
Method: single particle / : Xu HE, You C, Zhao L, Li J

PDB-8x8l:
Cryo-EM structure of the cortistatin 17-bound Somatostatin receptor 5-Gi protein complex
Method: single particle / : Xu HE, You C, Zhao L, Li J

EMDB-40975:
CryoEM map of mouse mediator complex with alternate conformation CKM module
Method: single particle / : Zhao H, Asturias F

EMDB-36730:
SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies
Method: single particle / : Yang Y, Zhang CH

EMDB-36735:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C3 symmetry)
Method: single particle / : Yang Y, Zhang CH

EMDB-36740:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C1 symmetry)
Method: single particle / : Yang Y, Zhang CH

EMDB-28966:
CryoEM map of de novo designed oligomeric protein C4-71_6x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28967:
CryoEM map of de novo designed oligomeric protein C4-71_8x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28968:
CryoEM map of de novo designed oligomeric protein C6-71
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28969:
CryoEM map of de novo designed oligomeric protein C6-71_6x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more