[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,092 items for (author: li & sy)

EMDB-19045:
DNA bound type IV-A3 CRISPR effector complex from K. pneumoniae
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19046:
DNA bound type IV-A1 CRISPR effector complex from P. oleovorans
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19120:
DNA bound type IV-A1 CRISPR effector complex from P. oleovorans, main body
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19124:
DNA bound type IV-A1 CRISPR effector complex from P. oleovorans Cas6 focused map
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19125:
DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19126:
Main density of the DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19127:
DinG focused map of DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19688:
DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state I)
Method: single particle / : Skorupskaite A, Ragozius V, Cepaite R, Klein N, Randau L, Malinauskaite L, Pausch P

EMDB-19689:
DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state II)
Method: single particle / : Skorupskaite A, Ragozius V, Cepaite R, Klein N, Randau L, Malinauskaite L, Pausch P

EMDB-19690:
DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state III)
Method: single particle / : Skorupskaite A, Ragozius V, Cepaite R, Klein N, Randau L, Malinauskaite L, Pausch P

EMDB-51026:
Focused map of Cas6 of the CRISPR type IV-A1 DinG bound complex
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

PDB-8rc2:
DNA bound type IV-A3 CRISPR effector complex from K. pneumoniae
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

PDB-8rc3:
DNA bound type IV-A1 CRISPR effector complex from P. oleovorans
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

PDB-8rfj:
DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans
Method: single particle / : Miksys A, Cepaite R, Malinauskaite L, Pausch P

EMDB-19884:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epr:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19882:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19883:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epp:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epq:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19938:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with water molecules at 1.94 A resolution
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

EMDB-19939:
Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoquinone bound at plastoquionol reduction site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

EMDB-19940:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at plastoquinol oxidation site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

PDB-9es7:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with water molecules at 1.94 A resolution
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

PDB-9es8:
Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoquinone bound at plastoquionol reduction site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

PDB-9es9:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at plastoquinol oxidation site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

EMDB-45648:
Representative cryo electron tomography reconstructions showing central pair microtubule alignment in a wild type Trypanosoma brucei cell
Method: electron tomography / : Sun SY, Huang Y

EMDB-45649:
Representative cryo electron tomography reconstructions showing central pair microtubule misalignment in TbArl3A and TbArl3C dual RNAi cells.
Method: electron tomography / : Sun SY, Huang Y

EMDB-19917:
New1 bound to 80S ribosome; A-tRNA, P-tRNA, eIF5a (State 1)
Method: single particle / : Paternoga H, Pochopien AA, Wilson DN

EMDB-19918:
New1 bound to 80S ribosome; A-tRNA, P-E*-tRNA (State 2)
Method: single particle / : Paternoga H, Pochopien AA, Wilson DN

EMDB-19921:
New1 bound to 80S ribosome; A-tRNA, P-tRNA, E-tRNA (State 5)
Method: single particle / : Paternoga H, Pochopien AA, Wilson DN

EMDB-19922:
New1 bound to 80S ribosome; A-tRNA, P-tRNA, E-tRNA (State 6)
Method: single particle / : Paternoga H, Pochopien AA, Wilson DN

EMDB-19923:
New1 bound to 80S ribosome; P-tRNA, E-tRNA (State 4)
Method: single particle / : Paternoga H, Pochopien AA, Wilson DN

EMDB-19924:
New1 bound to 80S ribosome; eRF1, P-tRNA, E-tRNA (State 7)
Method: single particle / : Paternoga H, Pochopien AA, Wilson DN

EMDB-19925:
New1 bound to 80S ribosome; A-P-tRNA, P-E-tRNA (State 3)
Method: single particle / : Paternoga H, Pochopien AA, Wilson DN

EMDB-17988:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) apo form
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18184:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP-bound form
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18600:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+GTP-bound form, compressed
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18601:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+GTP-bound form, less-compressed
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18602:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+ppGpp-bound form, compressed
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18604:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+ppGpp-bound form, less-compressed
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18606:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+IMP-bound form, extended
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18607:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP-bound form, compressed
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-18608:
Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+IMP-bound form, half-extended
Method: single particle / : Bulvas O, Kouba T, Pichova I

EMDB-41854:
Structure of Human Mitochondrial Chaperonin V72I Mutant
Method: single particle / : Chen L, Wang J

PDB-8u39:
Structure of Human Mitochondrial Chaperonin V72I mutant
Method: single particle / : Chen L, Wang J

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-44484:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

EMDB-44491:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9ber:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more