[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,506 items for (author: li & dl)

EMDB-70449:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

EMDB-70450:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

PDB-9og1:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

PDB-9og2:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

EMDB-72010:
Hamster Scap/Insig-2 complex L1-L7 domain/Fab4G10 focused map
Method: single particle / : Williams BC, Kober DL, Bai X, Radhakrishnan A, Rosenbaum DM

EMDB-71964:
Hamster Scap/Insig-2 complex with cholesterol and bound Fab4G10
Method: single particle / : Williams BC, Kober DL, Bai X, Radhakrishnan A, Rosenbaum DM

EMDB-72029:
Hamster Scap with bound Fab4G10
Method: single particle / : Williams BC, Kober DL, Bai X, Radhakrishnan A, Rosenbaum DM

EMDB-72012:
Hamster Scap L1-L7 domain/Fab4G10 focused map
Method: single particle / : Williams BC, Kober DL, Bai X, Radhakrishnan A, Rosenbaum DM

EMDB-73458:
Designed antibody vAB66 targeting PAP-HLA A*02:01
Method: single particle / : Jude KM, Garcia KC

EMDB-73460:
TCR mimic antibody vAB-30 in complex with MAGE-A3 in HLA-A1
Method: single particle / : Wang N, Jude KM

PDB-9ytd:
Designed antibody vAB66 targeting PAP-HLA A*02:01
Method: single particle / : Jude KM, Garcia KC

PDB-9ytf:
TCR mimic antibody vAB-30 in complex with MAGE-A3 in HLA-A1
Method: single particle / : Wang N, Jude KM

EMDB-54480:
Tomogram of unbudded yeast cell overexpressing Ldm1
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54483:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-53716:
Hexahistidine-tagged tobacco mosaic virus coat protein 3-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53717:
Hexahistidine-tagged tobacco mosaic virus coat protein 4-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53718:
Hexahistidine-tagged tobacco mosaic virus coat protein 5-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53720:
Hexahistidine-tagged tobacco mosaic virus coat protein 6-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-73631:
The Kaggle CryoET Object Identification Challenge: ground truth 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73633:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73634:
The Kaggle CryoET Object Identification Challenge: ground truth apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73635:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73636:
The Kaggle CryoET Object Identification Challenge: ground truth virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73637:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73638:
The Kaggle CryoET Object Identification Challenge: ground truth beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73639:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73640:
The Kaggle CryoET Object Identification Challenge: ground truth beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73641:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73642:
The Kaggle CryoET Object Identification Challenge: ground truth thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73643:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-54486:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor (unbudded region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54487:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor(bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54489:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54497:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-55533:
Activation intermediate of ALC1/CHD1L bound to a PARylated nucleosome
Method: single particle / : Bridges HR, Bacic L, Deindl S, Gaullier G

EMDB-55534:
Activation intermediate of ALC1/CHD1L bound to a PARylated nucleosome - regulatory linker segment resolved
Method: single particle / : Bridges HR, Bacic L, Deindl S, Gaullier G

PDB-9t4v:
Activation intermediate of ALC1/CHD1L bound to a PARylated nucleosome
Method: single particle / : Bridges HR, Bacic L, Deindl S, Gaullier G

EMDB-49373:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

EMDB-49405:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1
Method: single particle / : Borst AJ, Weidle C

PDB-9nfu:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

PDB-9nh7:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Method: single particle / : Borst AJ, Weidle C

EMDB-49043:
Hemagglutinin CA09 homotrimer bound to AEL31302/AEL31311 Fab
Method: single particle / : Fernandez-Quintero ML, Turner HL

EMDB-49044:
Hemagglutinin CA09 homotrimer bound to AMB38310/AMB38599 Fab
Method: single particle / : Fernandez-Quintero ML, Raghavan SSR, Gharpure A, Turner HL, Ward AB

PDB-9n5y:
Hemagglutinin CA09 homotrimer bound to AEL31302/AEL31311 Fab
Method: single particle / : Fernandez-Quintero ML, Turner HL

PDB-9n5z:
Hemagglutinin CA09 homotrimer bound to AMB38310/AMB38599 Fab
Method: single particle / : Fernandez-Quintero ML, Raghavan SSR, Gharpure A, Turner HL, Ward AB

EMDB-12250:
Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7naw:
Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

EMDB-47447:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

EMDB-53547:
Norovirus NS3 hexamer in complex with ATP-gamma-S
Method: single particle / : Haas M, Drulyte I, Hurdiss DL

EMDB-64215:
CryoEM structure of the T.thermophilus transcription initiation complex in the presence of ATP
Method: single particle / : Duan W, Kaushik A, Serganov A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more