[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 219 items for (author: lei & ds)

EMDB-38560:
Structure of Nipah virus Bangladesh string G protein ectodomain monomer bound to single-domain antibody n425 at 3.22 Angstroms overall resolution

EMDB-38563:
Structure of Nipah virus Malaysia string G protein ectodomain monomer bound to single-domain antibody n425 at 3.63 Angstroms overall resolution

EMDB-38564:
Structure of Nipah virus Bangladesh string G protein ectodomain tetramer bound to single-domain antibody n425 at 5.87 Angstroms overall resolution

EMDB-40815:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, N611 and base from participant 017

EMDB-40816:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 03

EMDB-40817:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 07

EMDB-40818:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp120-GH and base from participant 09

EMDB-40819:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, gp41-GH/FP and base from participant 11

EMDB-17766:
CryoEM structure of Nal1 protein, allele SPIKE, from Oryza sativa japonica group

EMDB-17768:
CryoEM structure of Nal1 protein, allele IR64, from Oryza sativa indica cultivar

EMDB-18207:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide, Glacios map

EMDB-18230:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide

EMDB-18915:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2

EMDB-16453:
SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs

EMDB-16473:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)

PDB-8c89:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)

EMDB-28378:
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa

PDB-8eok:
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa

EMDB-41156:
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

EMDB-41157:
Global reconstruction for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

EMDB-41158:
CS2it1p2_F7K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

EMDB-41160:
CS4tt1p1_E3K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

EMDB-41161:
gH base local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

EMDB-41179:
HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab

EMDB-41180:
Global reconstruction for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab

PDB-8tco:
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

PDB-8tea:
HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab

EMDB-28279:
Structure of the C3bB proconvertase in complex with lufaxin

PDB-8enu:
Structure of the C3bB proconvertase in complex with lufaxin

EMDB-41181:
CS3pt1p4_C1L local refinement for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab

EMDB-35365:
Structure of an ancient TsaD-TsaC-SUA5-TcdA modular enzyme (TsaN)

EMDB-14717:
SARS CoV Spike protein, Closed C3 conformation

EMDB-14718:
SARS CoV Spike protein, Closed C1 conformation

EMDB-14724:
SARS CoV Spike protein, Open conformation

PDB-7zh1:
SARS CoV Spike protein, Closed C3 conformation

PDB-7zh2:
SARS CoV Spike protein, Closed C1 conformation

PDB-7zh5:
SARS CoV Spike protein, Open conformation

EMDB-27070:
apo form Cryo-EM structure of Campylobacter jejune ketol-acid reductoisommerase crosslinked by Glutaraldehyde

EMDB-28189:
SARS-CoV-2 Spike in complex with biparatopic nanobody BP10

EMDB-28190:
SARS-CoV-2 RBD in complex with biparatopic nanobody BP10 local refinement

EMDB-27872:
Cryo-EM structure of the PAC1R-PACAP27-Gs complex

EMDB-27873:
Cryo-EM structure of the VPAC1R-PACAP27-Gs complex

EMDB-27874:
Cryo-EM structure of the VPAC1R-VIP-Gs complex

PDB-8e3x:
Cryo-EM structure of the PAC1R-PACAP27-Gs complex

PDB-8e3y:
Cryo-EM structure of the VPAC1R-PACAP27-Gs complex

PDB-8e3z:
Cryo-EM structure of the VPAC1R-VIP-Gs complex

EMDB-25621:
The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11

EMDB-25623:
SIVmac239.K180S SOSIP in complex with FZ019.2 Fab

EMDB-25624:
SIVmac239.K180S SOSIP in complex with FZ012.7 Fab

EMDB-25625:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh33519

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more