[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 214 items for (author: lei & ds)

EMDB-40815:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, N611 and base from participant 017
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40816:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 03
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40817:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 07
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40818:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp120-GH and base from participant 09
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40819:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, gp41-GH/FP and base from participant 11
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-17766:
CryoEM structure of Nal1 protein, allele SPIKE, from Oryza sativa japonica group
Method: single particle / : Huang LY, Rety S, Xi XG

EMDB-17768:
CryoEM structure of Nal1 protein, allele IR64, from Oryza sativa indica cultivar
Method: single particle / : Huang LY, Rety S, Xi XG

EMDB-18207:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide, Glacios map
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18230:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18915:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-16453:
SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

EMDB-16473:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

PDB-8c89:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

EMDB-28378:
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa
Method: single particle / : Andersen JF, Lei H

PDB-8eok:
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa
Method: single particle / : Andersen JF, Lei H

EMDB-41158:
CS2it1p2_F7K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41180:
Global reconstruction for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-28279:
Structure of the C3bB proconvertase in complex with lufaxin
Method: single particle / : Andersen JF, Lei H

PDB-8enu:
Structure of the C3bB proconvertase in complex with lufaxin
Method: single particle / : Andersen JF, Lei H

EMDB-41156:
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-41157:
Global reconstruction for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-41160:
CS4tt1p1_E3K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-41161:
gH base local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-41179:
HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-41181:
CS3pt1p4_C1L local refinement for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-35365:
Structure of an ancient TsaD-TsaC-SUA5-TcdA modular enzyme (TsaN)
Method: single particle / : Zhang ZL, Jin MQ, Yu ZJ, Chen W, Wang XL, Lei DS, Zhang WH

EMDB-14717:
SARS CoV Spike protein, Closed C3 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-14718:
SARS CoV Spike protein, Closed C1 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-14724:
SARS CoV Spike protein, Open conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh1:
SARS CoV Spike protein, Closed C3 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh2:
SARS CoV Spike protein, Closed C1 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh5:
SARS CoV Spike protein, Open conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-27070:
apo form Cryo-EM structure of Campylobacter jejune ketol-acid reductoisommerase crosslinked by Glutaraldehyde
Method: single particle / : Zheng S, Guddat LW

EMDB-28189:
SARS-CoV-2 Spike in complex with biparatopic nanobody BP10
Method: single particle / : Pymm PG, Glukhova A, Tham WH

EMDB-28190:
SARS-CoV-2 RBD in complex with biparatopic nanobody BP10 local refinement
Method: single particle / : Pymm PG, Glukhova A, Tham WH

EMDB-27872:
Cryo-EM structure of the PAC1R-PACAP27-Gs complex
Method: single particle / : Piper SJ, Danev R, Sexton P, Wootten D

EMDB-27873:
Cryo-EM structure of the VPAC1R-PACAP27-Gs complex
Method: single particle / : Piper SJ, Belousoff MJ, Danev R, Sexton P, Wootten D

EMDB-27874:
Cryo-EM structure of the VPAC1R-VIP-Gs complex
Method: single particle / : Piper SJ, Danev R, Sexton P, Wootten D

PDB-8e3x:
Cryo-EM structure of the PAC1R-PACAP27-Gs complex
Method: single particle / : Piper SJ, Danev R, Sexton P, Wootten D

PDB-8e3y:
Cryo-EM structure of the VPAC1R-PACAP27-Gs complex
Method: single particle / : Piper SJ, Danev R, Sexton P, Wootten D

PDB-8e3z:
Cryo-EM structure of the VPAC1R-VIP-Gs complex
Method: single particle / : Piper SJ, Danev R, Sexton P, Wootten D

EMDB-25621:
The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11
Method: single particle / : Berndsen ZT, Ward AB

EMDB-25623:
SIVmac239.K180S SOSIP in complex with FZ019.2 Fab
Method: single particle / : Berndsen ZT

EMDB-25624:
SIVmac239.K180S SOSIP in complex with FZ012.7 Fab
Method: single particle / : Berndsen ZT, Lee W

EMDB-25625:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh33519
Method: single particle / : Berndsen ZT, Lee W

EMDB-25626:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh31186
Method: single particle / : Berndsen ZT, Lee W

EMDB-25627:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh34620
Method: single particle / : Berndsen ZT, Lee W

EMDB-25628:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11008
Method: single particle / : Berndsen ZT, Lee W

EMDB-25629:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11008
Method: single particle / : Berndsen ZT, Lee W

EMDB-25630:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11002
Method: single particle / : Berndsen ZT, Lee W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more