[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 26 items for (author: lee & yy)

EMDB-48650:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

PDB-9mv0:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

EMDB-53284:
Pseudomonas aeruginosa Ptx2 toxin
Method: single particle / : Shatskiy D, Belyy A

PDB-9qpv:
Pseudomonas aeruginosa Ptx2 toxin
Method: single particle / : Shatskiy D, Belyy A

EMDB-60841:
Consensus map of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60842:
AGD-Focused map
Method: single particle / : Park JB, Roh SH

EMDB-60843:
GNATD focused acetyltransferase
Method: single particle / : Park JB, Rho SH

EMDB-60844:
RD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60845:
Consensus map of ligand bound acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60846:
AGD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60847:
GNATD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60848:
RD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60849:
Apo-state E.coli PatZ
Method: single particle / : Park JB, Roh SH

EMDB-60853:
Liganded-state E.coli PatZ
Method: single particle / : Park JB, Roh SH

EMDB-43237:
Structure of the BMAL1/HIF2A heterodimer in Complex with DNA
Method: single particle / : Li T, Tsai KL

EMDB-33402:
Formate dehydrogenase (FDH) from Methylobacterium extorquens AM1 (MeFDH1)
Method: single particle / : Park J, Heo YY, Roh SH, Lee HH

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33489:
Cryo-EM structure of human DICER-pre-miRNA in a dicing state
Method: single particle / : Lee H, Roh SH

EMDB-33490:
Cryo-EM structure of an apo-form of human DICER
Method: single particle / : Lee H, Roh SH

EMDB-22995:
Spike protein trimer
Method: single particle / : Asarnow D, Faust B, Bohn M, Bulkley D, Manglik A, Craik CS, Cheng Y

EMDB-22993:
SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22994:
SARS-CoV-2 Spike protein in complex with Fab 2H4
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22997:
SARS-CoV-2 spike glycoprotein:Fab 3D11 complex
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-23707:
SARS-CoV-2 Spike:5A6 Fab complex I focused refinement
Method: single particle / : Asarnow D, Cheng Y

EMDB-23709:
SARS-CoV-2 Spike:Fab 3D11 complex focused refinement
Method: single particle / : Asarnow D, Cheng Y

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more