[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 177 items for (author: lee & yt)

EMDB-46785:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46786:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46787:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46789:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), tail focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46791:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-44278:
Chimeric flavivirus between BinJV and YFV-17D
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44279:
Chimeric flavivirus between BinJV and YFV-ES504
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44280:
Chimeric flavivirus between BinJV and YFV-17D in complex with 2C9 Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44281:
Chimeric flavivirus between BinJV and YFV-ES504 in complex with 2C9 Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44282:
Chimeric flavivirus between BinJV and YFV-17D in complex with 5A Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44283:
Chimeric flavivirus between BinJV and YFV-ES504 in complex with 5A Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44284:
Chimeric flavivirus between BinJV and YFV-ES504 with YFV-17D DIII
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44285:
Chimeric flavivirus between BinJV and YFV-ES504 with YFV-17D DIII in complex with 2C9 Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44286:
Chimeric flavivirus between BinJV and YFV-Asibi with YFV-17D DIII
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44287:
Chimeric flavivirus between BinJV and YFV-ES504 T380R
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44288:
Envelope protein ASU of YFV-17D in complex with 2C9 Fab
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44289:
Envelope protein ASU of YFV-ES504 with YFV-17D DIII
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44290:
Envelope protein ASU of YFV-ES504 with YFV-17D DIII in complex with 2C9 Fab
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44291:
Envelope protein ASU of YFV-Asibi with YFV-17D DIII
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44292:
Envelope protein ASU of YFV-ES504 T380R
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-49804:
Chimeric flavivirus between BinJV and YFV-Asibi
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-49805:
Chimeric flavivirus between BinJV and YFV-Asibi T380R
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-70089:
Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex in the Ca2+ bound state
Method: single particle / : Cassell SJ, Khoshouei M, Wilhelm WA, Whicher JR

EMDB-70120:
Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex in the Ca2+ free state
Method: single particle / : Cassell SJ, Khoshouei M, Wilhelm WA, Whicher JR

EMDB-70121:
Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex bound to the bee toxin apamin
Method: single particle / : Cassell SJ, Khoshouei M, Wilhelm WA, Whicher JR

EMDB-70122:
Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex bound to a small molecule inhibitor
Method: single particle / : Cassell SJ, Khoshouei M, Wilhelm WA, Whicher JR

EMDB-70145:
Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex bound to a small molecule activator
Method: single particle / : Cassell SJ, Khoshouei M, Wilhelm WA, Whicher JR

EMDB-45474:
Structure of MORC2 PD mutant binding to AMP-PNP
Method: single particle / : Tan W, Shakeel S

EMDB-45475:
MORC2 ATPase dead mutant - S87A
Method: single particle / : Tan W, Shakeel S

EMDB-45476:
MORC2 PD mutant with DNA
Method: single particle / : Tan W, Shakeel S

EMDB-45477:
MORC2 ATPase structure
Method: single particle / : Tan W, Shakeel S

EMDB-45478:
MORC2 ATPase with DNA
Method: single particle / : Tan W, Shakeel S

PDB-9cdf:
Structure of MORC2 PD mutant binding to AMP-PNP
Method: single particle / : Tan W, Shakeel S

PDB-9cdg:
MORC2 ATPase dead mutant - S87A
Method: single particle / : Tan W, Shakeel S

PDB-9cdh:
MORC2 PD mutant with DNA
Method: single particle / : Tan W, Shakeel S

PDB-9cdi:
MORC2 ATPase structure
Method: single particle / : Tan W, Shakeel S

PDB-9cdj:
MORC2 ATPase with DNA
Method: single particle / : Tan W, Shakeel S

EMDB-46902:
Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin precursor 5.3
Method: single particle / : Werther R, Nguyen A, Estrada Alamo KA, Wang X, Campbell MG

EMDB-47968:
Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin candidate 2, open conformation
Method: single particle / : Werther R, Nguyen A, Estrada Alamo KA, Wang X, Campbell MG

EMDB-43745:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

PDB-8w2e:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

EMDB-42636:
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
Method: single particle / : Gretarsson K, Abini-Agbomson S, Armache KJ, Lu C

PDB-8uw1:
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
Method: single particle / : Gretarsson K, Abini-Agbomson S, Armache KJ, Lu C

EMDB-41346:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41359:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41360:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41361:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41362:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tkc:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl2:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more