[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 883 items for (author: lang & k)

EMDB-58190:
Subtomogram average of E. scolopes ribosome
Method: subtomogram averaging / : So-Last MGF, Allegretti MA

EMDB-70380:
Zebrafish Abcb4 in IF-narrow conformation (IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70381:
Zebrafish Abcb4 in IF-Wide conformation (IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70382:
Zebrafish Abcb4 in IF-Medium conformation (IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70383:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Tariquidar (TQR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70384:
Zebrafish Abcb4 in IF-medium conformation in the presence of Tariquidar (TQR-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70386:
Zebrafish Abcb4 in IF-Narrow conformation in the presence of Elacridar (ELA-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70387:
Zebrafish Abcb4 in IF-Medium conformation in the presence of Elacridar (ELA-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70388:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Elacridar (ELA-IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70389:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Vincristine (VCR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70390:
Zebrafish Abcb4 in IF-medium conformation in the presence of Vincristine (VCR-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70391:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Vincristine (VCR-IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9ody:
Zebrafish Abcb4 in IF-narrow conformation (IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9odz:
Zebrafish Abcb4 in IF-Wide conformation (IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9oe0:
Zebrafish Abcb4 in IF-Medium conformation (IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe1:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Tariquidar (TQR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe2:
Zebrafish Abcb4 in IF-medium conformation in the presence of Tariquidar (TQR-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe4:
Zebrafish Abcb4 in IF-Narrow conformation in the presence of Elacridar (ELA-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe5:
Zebrafish Abcb4 in IF-Medium conformation in the presence of Elacridar (ELA-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe6:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Elacridar (ELA-IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9oe7:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Vincristine (VCR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe8:
Zebrafish Abcb4 in IF-medium conformation in the presence of Vincristine (VCR-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe9:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Vincristine (VCR-IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-55395:
Atg2-Atg18 complex from yeast
Method: single particle / : Chumpen Ramirez S, Shvarev D, Vargas Duarte P, Milach J, Lang E, Kuchenbuch S, Reggiori F, Moeller A, Ungermann C

PDB-9t0c:
Atg2-Atg18 complex from yeast
Method: single particle / : Chumpen Ramirez S, Shvarev D, Vargas Duarte P, Milach J, Lang E, Kuchenbuch S, Reggiori F, Moeller A, Ungermann C

EMDB-47893:
Cryo-EM map of 2 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47895:
Cryo-EM map of 4 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-70607:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9om5:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-47885:
Cryo-EM local map of dimerized VRC36 Fabs
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49964:
Global map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemaglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-56516:
In situ Dictyostelium discoideum cytosolic vault
Method: subtomogram averaging / : Geissler K, Kreysing JP, Beck M

EMDB-53274:
Hcp3-Tce1 complex from the Pseudomonas aeruginosa Type VI Secretion System
Method: single particle / : Paracuellos P, Bexter A, Patkowski JB, Omelchenko O, Mace K, Ilangovan A, Filloux A, Costa TRD

PDB-9qpe:
Hcp3-Tce1 complex from the Pseudomonas aeruginosa Type VI Secretion System
Method: single particle / : Paracuellos P, Bexter A, Patkowski JB, Omelchenko O, Mace K, Ilangovan A, Filloux A, Costa TRD

EMDB-53686:
Prefusion stabilized spike glycoprotein of human coronavirus OC43.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

EMDB-53687:
Prefusion stabilized spike glycoprotein of equine coronavirus.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

PDB-9r6s:
Prefusion stabilized spike glycoprotein of human coronavirus OC43.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

PDB-9r6t:
Prefusion stabilized spike glycoprotein of equine coronavirus.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

EMDB-48285:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

PDB-9mi8:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

EMDB-56238:
In situ cryo-ET subtomogram averaged map of Flotillin complex
Method: subtomogram averaging / : Li D, Lizarrondo J, Wilfling F

EMDB-56295:
In situ cryo-ET tomogram of a lysosomal structure in untreated HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56296:
In situ cryo-ET tomogram of lysosome damaged by LLOMe (0.5mM, 60min) in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56297:
In situ cryo-ET of lysosome damaged by LLOMe (0.5mM, 60min) encapsulated in an autophagosome in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56298:
In situ cryo-ET tomogram of lysosomes in BAPTA AM pre-treated (50uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56300:
In situ cryo-ET tomogram of lysosomes in LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56327:
In situ cryo-ET tomogram of lysosomal structure in untreated rat hippocampal neurons
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-56329:
In situ cryo-ET tomogram of lysosomes in E64d pre-treated (20uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56330:
In situ cryo-ET tomogram of lysosomal structure in LLOMe-treated (0.5mM, 1h) rat hippocampal neuron.
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-46602:
CryoEM structure of anti-MHC-I Fab B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more